View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10802_high_5 (Length: 372)
Name: NF10802_high_5
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 337
Target Start/End: Original strand, 30870942 - 30871266
Alignment:
| Q |
11 |
cataggcattgatgttatgttctctatagcttaaattgtagggagatgctttgaaaacattttgccatttctgaatttttgtactatacaaagctacaaa |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30870942 |
cataggcattgatgttatgttct--atagcttaaattgtagggagatgctttgaaaacattttgccatttctgaatttttgtactatacaaagctataaa |
30871039 |
T |
|
| Q |
111 |
ttgggcaatgccattcacttgcaccaactggaatctttgacgtactttcatgttcaatgtattagcatatcaatatcaaatggtatcccttcatcaatgt |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30871040 |
ttgggcaatgccattcactttcaccaactggaatctttgacgtactttcatgttcaatgtattagcatatcaatagcaaatggtatcccttcatcaatgt |
30871139 |
T |
|
| Q |
211 |
caaacattaatgatattttggattcatttattccgtacccacgtgaatgatggttgaactgatcatgacttgagtttacaactatttgtggaatgtcatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30871140 |
caaacattaatgatattttggattcatttattccgtacccacgtgaatgatggttgaactgatcatgacttgagtttacaactatttgtggaatgtcatg |
30871239 |
T |
|
| Q |
311 |
tctgattatgtatttcaatagtggctg |
337 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30871240 |
tctgattatgtatttcaatagtggctg |
30871266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University