View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10802_low_1 (Length: 470)
Name: NF10802_low_1
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 6775061 - 6774609
Alignment:
| Q |
1 |
aatgatttgtcggatcgacctaaagaagagatagagagactagagactctcttaagagaatgggaacagattgtaacaaaaagcaataagcttacttgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6775061 |
aatgatttgtcggatcgacctaaagaagagatagagagactagagactctcttaagagaatgggaacagattgtaacaaaaagcaataagcttacttgga |
6774962 |
T |
|
| Q |
101 |
agaactttttgtcttttccaagataccaatcaaagcttcagaagcaacgtcagaagcttgaaagatactcgtctgttaatgttcaacttgagaataaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6774961 |
agaactttttgtcttttccaagataccaatcaaagcttcagaagcaacgtcagaagcttgagagatactcgtctgttaatgttcaacttgagaataaaac |
6774862 |
T |
|
| Q |
201 |
tgatttgatgaagctgagggataaggtggatgaaattttgaagagaatggtgaattcgggtcagtttgatgggaaacaaataaggggtttgtctggtgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6774861 |
tgatttgatgaagctgagggataaggtggatgaaattttgaagagaatggtgaattcgggtcagtttgatgggaaacaaataaggggtttgtttggtgct |
6774762 |
T |
|
| Q |
301 |
cctgaagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattgatgaagaagggtgcttctgtacttgttttgactggtttgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6774761 |
cctgaagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattgatgaagaagggtgcttctgtacttgttttgactggtttgg |
6774662 |
T |
|
| Q |
401 |
gtggatctggtaaaagcactcttgctaagaagctctgctgggaaccacaaatc |
453 |
Q |
| |
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| T |
6774661 |
gtggatctggtaaaagcactcttgctaagaagctctgctgggaaccacaaatc |
6774609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 261 - 453
Target Start/End: Original strand, 7095588 - 7095780
Alignment:
| Q |
261 |
tcagtttgatgggaaacaaataaggggtttgtctggtgctcctgaagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattg |
360 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| |||||||||||||||||||| || || ||||||||||| ||||| |||||||||||| |||||||| |
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| T |
7095588 |
tcagtttgataggaatcaaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttaaataagttgaagattgaattg |
7095687 |
T |
|
| Q |
361 |
atgaagaagggtgcttctgtacttgttttgactggtttgggtggatctggtaaaagcactcttgctaagaagctctgctgggaaccacaaatc |
453 |
Q |
| |
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| T |
7095688 |
atgaaagatggtgtttctgtgcttgttttgactggtttgggtggatctggtaaaaccactcttgctaagaagctctgttgggaaccacaaatc |
7095780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 4 - 365
Target Start/End: Complemental strand, 6762636 - 6762251
Alignment:
| Q |
4 |
gatttgtcggatcgacctaaagaagagatagagagactagagactctcttaagagaatgggaacagattgtaacaaaaagcaataagcttacttggaaga |
103 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||| ||||| ||||| |||||||| | ||| || |||| ||||||||| |||||||||||||||| |
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| T |
6762636 |
gatttgttggatcgaccaaaagaagagataggaagattagaggctctcgtaagagaaggtgaagagcttgttggaaaaagcaagaagcttacttggaaga |
6762537 |
T |
|
| Q |
104 |
actttttgtcttttccaagataccaatcaaagcttcagaagcaacgtcagaagcttgaaagatactcgtctgttaatgttcaacttgagaataaaactga |
203 |
Q |
| |
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|||||| | ||||||| | |||||| ||||||| |||||||| ||||||||| ||| ||| | ||||||||| ||| | |||||||||| ||| |
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|
| T |
6762536 |
acttttatttttttccaggttaccaaggaaagcttaagaagcaagacgcgaagcttgagagacacttgaatgttaatgtgcaagtcgagaataaaaatga |
6762437 |
T |
|
| Q |
204 |
tttgatgaagctgagggataaggtggatgaa---------attttgaag---------agaatggtgaattcgggtcagtttgatgggaaacaaataagg |
285 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||| |||||| |
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| T |
6762436 |
tttgatggagctgagggttaaggtggatgaaatgtacaagattttgaagattgtgaatagaatggtgagtttgggtcagtttgatgggaaacagataagg |
6762337 |
T |
|
| Q |
286 |
ggtttgtctggtgctcctgaagagcctgaatttattggaatggatga------gcctttgaataagttgaagtttgaattgatgaa |
365 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| || |||||||||| |
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| T |
6762336 |
ggtttgtgtggtgctcctgaagagcctggatttattggaatggatgagccggcgcctttgaataatttgaaggttaaattgatgaa |
6762251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 277 - 445
Target Start/End: Complemental strand, 6740657 - 6740489
Alignment:
| Q |
277 |
caaataaggggtttgtctggtgctcctgaagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattgatgaagaagggtgctt |
376 |
Q |
| |
|
||||| |||||| ||| |||||||||| | |||||||||||||||||||||| | ||| || ||| |||||||| |||||||||||||| | ||||||| |
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| T |
6740657 |
caaattaggggtctgtgtggtgctcctcaggagcctgaatttattggaatggttaagcaatttaatgagttgaaggttgaattgatgaaggatggtgctt |
6740558 |
T |
|
| Q |
377 |
ctgtacttgttttgactggtttgggtggatctggtaaaagcactcttgctaagaagctctgctgggaac |
445 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
6740557 |
ctgtgcttgttttgactggtttgggtggatctggtaaaaccactcttgctaagaagctctgctgggaac |
6740489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 277 - 437
Target Start/End: Complemental strand, 6725556 - 6725396
Alignment:
| Q |
277 |
caaataaggggtttgtctggtgctcctgaagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattgatgaagaagggtgctt |
376 |
Q |
| |
|
||||| || ||||||| |||||||||| |||||||||||||||||||||||| | ||| || ||| |||||||| |||||||||||||| | ||||||| |
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|
| T |
6725556 |
caaattagaggtttgtatggtgctcctcaagagcctgaatttattggaatggttaagcaatttaatgagttgaaggttgaattgatgaaggatggtgctt |
6725457 |
T |
|
| Q |
377 |
ctgtacttgttttgactggtttgggtggatctggtaaaagcactcttgctaagaagctctg |
437 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
6725456 |
ctgtgcttgttttgactggtttgggtggatctggtaaaaccactcttgctaagaagctctg |
6725396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 235 - 453
Target Start/End: Complemental strand, 6717550 - 6717332
Alignment:
| Q |
235 |
attttgaagagaatggtgaattcgggtcagtttgatgggaaacaaataaggggtttgtctggtgctcctgaagagcctgaatttattggaatggatgagc |
334 |
Q |
| |
|
||||||| ||||| || ||||| ||||||||||||||| | || || ||||| |||| ||||||||||||||||||| | | ||| ||| | ||||||| |
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|
| T |
6717550 |
attttgatgagaaaggagaatttgggtcagtttgatggaagtcagattaggggattgtgtggtgctcctgaagagcctcagtgtatgggagttgatgagc |
6717451 |
T |
|
| Q |
335 |
ctttgaataagttgaagtttgaattgatgaagaagggtgcttctgtacttgttttgactggtttgggtggatctggtaaaagcactcttgctaagaagct |
434 |
Q |
| |
|
||||||||||||||||| || |||| |||| | |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
6717450 |
ctttgaataagttgaagattcaattattgaaagatggtgtttctgtacttgttttgactggtttaggtggatctggtaaaagcactcttgctaagaagct |
6717351 |
T |
|
| Q |
435 |
ctgctgggaaccacaaatc |
453 |
Q |
| |
|
|| ||| | ||||||||| |
|
|
| T |
6717350 |
ttgttggaatccacaaatc |
6717332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 277 - 437
Target Start/End: Complemental strand, 6749719 - 6749558
Alignment:
| Q |
277 |
caaataaggggtttgtctggtgctcctgaagagcctgaatttattggaatggatgagcctttgaataagttgaagtttgaattgatgaagaagggtgctt |
376 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| || || ||||||||||| |||||||||||||||||| |||| ||||||||| | |||| || |
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|
| T |
6749719 |
caaataaggggtttgtgtggtgctcctgaagagcctgtatgcatgggaatggatgaacctttgaataagttgaagattgagttgatgaaggatggtgttt |
6749620 |
T |
|
| Q |
377 |
ctgtacttgttttgactggtttgggtggatctggt-aaaagcactcttgctaagaagctctg |
437 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
6749619 |
ctgtactttttttgactggtttgggtggatctggtaaaaaccactcttgccaagaagctctg |
6749558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 6717632 - 6717565
Alignment:
| Q |
171 |
gtctgttaatgttcaacttgagaataaaactgatttgatgaagctgagggataaggtggatgaaattt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||| || ||||||||||||||||| |
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|
| T |
6717632 |
gtctgttaatgttcaacttgagaataaaaaagatttgatcaagctggtggctaaggtggatgaaattt |
6717565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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