View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10802_low_10 (Length: 330)

Name: NF10802_low_10
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10802_low_10
NF10802_low_10
[»] scaffold0352 (1 HSPs)
scaffold0352 (38-317)||(16185-16463)


Alignment Details
Target: scaffold0352 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 38 - 317
Target Start/End: Complemental strand, 16463 - 16185
Alignment:
Q  38 attattcaaagcagatctctaatccttcttgagaaggaaaaataatacacctgcaactgtagtcaattgaaaacaggtttctttaaattctttgctcacc 137  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  16463 attattcaaagcagatctcaaatccttcttgagaaggaaaaacaatacacctgcaactgtagtcaattgaaaacaggttcctttaaattttttgctcacc 16364  T
Q  138 ttttcagctttttcactctattatcacgccttcctaatatcaataattgatttacccnnnnnnnnnngaagaggcataatcgatttacccttattggtga 237  Q
     ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||| |||||||| ||    
T  16363 ctttcatctttttcactctattctcacgccttcctaatatcaataattgatttaccc-tttttttttgaagaggcataatcgatttacacttattggcga 16265  T
Q  238 tctattctcactgtagtcaattatttcgaagtttatgtttgttggaattttgttttcaatcgattaacatttgtggttct 317  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16264 tctattctcaccgtagtcaattatttcgaagtttatgtttgttggaattttgttttcaatcgattaacatttgtggttct 16185  T

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