View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10802_low_11 (Length: 306)

Name: NF10802_low_11
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10802_low_11
NF10802_low_11
[»] scaffold0314 (1 HSPs)
scaffold0314 (189-243)||(8953-9007)
[»] chr6 (9 HSPs)
chr6 (197-249)||(10031569-10031621)
chr6 (194-249)||(19369816-19369871)
chr6 (194-243)||(6751887-6751936)
chr6 (194-232)||(10158000-10158038)
chr6 (195-248)||(5579654-5579707)
chr6 (202-255)||(1334654-1334707)
chr6 (206-243)||(29959180-29959217)
chr6 (196-232)||(7942271-7942307)
chr6 (196-232)||(9024183-9024219)
[»] chr4 (14 HSPs)
chr4 (28-139)||(4089876-4089993)
chr4 (187-250)||(44362664-44362727)
chr4 (194-249)||(37496703-37496758)
chr4 (197-242)||(13307883-13307928)
chr4 (196-253)||(18513248-18513305)
chr4 (204-255)||(34589721-34589772)
chr4 (194-248)||(13117429-13117483)
chr4 (194-248)||(14465299-14465353)
chr4 (207-249)||(28663491-28663533)
chr4 (196-230)||(45615422-45615456)
chr4 (195-232)||(683068-683105)
chr4 (196-232)||(9988706-9988742)
chr4 (196-232)||(22596987-22597023)
chr4 (194-234)||(40224503-40224543)
[»] chr1 (3 HSPs)
chr1 (194-248)||(14332409-14332462)
chr1 (196-247)||(40176604-40176655)
chr1 (194-230)||(31667443-31667479)
[»] chr2 (8 HSPs)
chr2 (194-247)||(43586010-43586063)
chr2 (196-248)||(18512149-18512201)
chr2 (194-249)||(45000851-45000905)
chr2 (195-244)||(13501084-13501133)
chr2 (198-255)||(39399905-39399962)
chr2 (196-247)||(18570973-18571024)
chr2 (194-245)||(33884054-33884105)
chr2 (194-247)||(14373432-14373485)
[»] chr7 (12 HSPs)
chr7 (196-247)||(5937428-5937479)
chr7 (194-249)||(38134411-38134466)
chr7 (194-248)||(1885573-1885627)
chr7 (197-255)||(35238192-35238250)
chr7 (196-241)||(2144546-2144591)
chr7 (197-242)||(48964070-48964115)
chr7 (198-238)||(2143862-2143902)
chr7 (194-253)||(25956442-25956499)
chr7 (197-232)||(44172898-44172933)
chr7 (194-247)||(22801746-22801799)
chr7 (197-242)||(28635178-28635223)
chr7 (196-232)||(37775998-37776034)
[»] chr8 (9 HSPs)
chr8 (194-248)||(24295142-24295196)
chr8 (197-247)||(27733848-27733898)
chr8 (195-248)||(26915246-26915299)
chr8 (196-248)||(42874522-42874574)
chr8 (195-238)||(31119097-31119140)
chr8 (189-248)||(31548293-31548352)
chr8 (195-248)||(34073984-34074037)
chr8 (196-228)||(1586628-1586660)
chr8 (194-230)||(32696382-32696418)
[»] chr5 (7 HSPs)
chr5 (202-248)||(30080514-30080560)
chr5 (196-246)||(38784808-38784858)
chr5 (195-232)||(10009842-10009879)
chr5 (194-241)||(10010561-10010608)
chr5 (187-249)||(19167574-19167637)
chr5 (195-245)||(26205766-26205816)
chr5 (216-248)||(309158-309190)
[»] chr3 (8 HSPs)
chr3 (194-248)||(49179720-49179774)
chr3 (187-243)||(14338481-14338537)
chr3 (182-232)||(20691335-20691385)
chr3 (194-232)||(44427857-44427895)
chr3 (196-232)||(9210832-9210868)
chr3 (199-231)||(34409352-34409384)
chr3 (202-242)||(42076762-42076802)
chr3 (191-243)||(52558130-52558182)
[»] scaffold0024 (1 HSPs)
scaffold0024 (205-248)||(18124-18167)


Alignment Details
Target: scaffold0314 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 9007 - 8953
Alignment:
Q  189 tgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 243  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  9007 tgacaccgacacttgtgattacgttgaattatgtcattttctcaaaattttatcg 8953  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 10031621 - 10031569
Alignment:
Q  197 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 249  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtca 10031569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 19369871 - 19369816
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 249  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  19369871 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgtca 19369816  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 6751887 - 6751936
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 243  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  6751887 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatcg 6751936  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 10158038 - 10158000
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctca 232  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  10158038 ccgacacatgtgattacattgaattatgtcattttctca 10158000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 5579707 - 5579654
Alignment:
Q  195 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    |||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||||    
T  5579707 cgacacttgtgactacattgaactatgtcattttctcaaaattttatcggtgtc 5579654  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 1334707 - 1334654
Alignment:
Q  202 tgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 255  Q
    ||||||||| |||||||||||| |||| ||| ||||||||| |||||| |||||    
T  1334707 tgtgattacattgaattatgtccttttttcaaaattttatccgtgtcaatgtgt 1334654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 29959217 - 29959180
Alignment:
Q  206 attacgttgaattatgtcattttctcacaattttatcg 243  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaattttatcg 29959180  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 7942307 - 7942271
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctca 232  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  7942307 gacacatgtgattacattgaattatgtcattgtctca 7942271  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 9024183 - 9024219
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctca 232  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  9024183 gacacatatgattacattgaattatgtcattttctca 9024219  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 4089876 - 4089993
Alignment:
Q  28 gtttgtgaagttcttcgtggtcaacaaattcatcactcatcatcacaggt-ataattctcttcaatatc----atggatgtttaatc----atataaatg 118  Q
    |||||||| ||||| |||||||||   ||||||||||||||| || |||| ||||||||||| ||||||    |||||||||| |||    |||||||||    
T  4089876 gtttgtgatgttctccgtggtcaa---attcatcactcatcagcagaggtaataattctctttaatatcatcgatggatgtttgatcaaatatataaatg 4089972  T
Q  119 ctttcttggtttattaagtgt 139  Q
    |||||||||||||||||||||    
T  4089973 ctttcttggtttattaagtgt 4089993  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 44362727 - 44362664
Alignment:
Q  187 tctgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcag 250  Q
    |||||| || |||| ||||||||| || |||||||||||||||||| |||||||||||||||||    
T  44362727 tctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgtcag 44362664  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 37496758 - 37496703
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 249  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||  ||||||||||||    
T  37496758 ccgacacttgtgattacattgaattatgtcattttctcaaaaaattatcggtgtca 37496703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 13307928 - 13307883
Alignment:
Q  197 acacatgtgattacgttgaattatgtcattttctcacaattttatc 242  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||    
T  13307928 acacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 18513248 - 18513305
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgt 253  Q
    ||||||| ||||||| ||||||||||||||||||||| | | ||||||||||| ||||    
T  18513248 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgtctgtgt 18513305  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 34589721 - 34589772
Alignment:
Q  204 tgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 255  Q
    ||||||| ||||||||||||||||||||| | | |||||||||||| |||||    
T  34589721 tgattacattgaattatgtcattttctcaaattgttatcggtgtcaatgtgt 34589772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 13117483 - 13117429
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    ||||||| ||||||||| ||||||| ||||||||||||  |||||||| ||||||    
T  13117483 ccgacacttgtgattacattgaattttgtcattttctccaaattttattggtgtc 13117429  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 14465299 - 14465353
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    ||||||||| ||||||  ||||||||||||||||||||| | | |||||||||||    
T  14465299 ccgacacatatgattaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 28663533 - 28663491
Alignment:
Q  207 ttacgttgaattatgtcattttctcacaattttatcggtgtca 249  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttatccgtgtca 28663491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 45615422 - 45615456
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttct 230  Q
    |||||||||||||||||| ||||||||||||||||    
T  45615422 gacacatgtgattacgttcaattatgtcattttct 45615456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 683105 - 683068
Alignment:
Q  195 cgacacatgtgattacgttgaattatgtcattttctca 232  Q
    |||||||||||||||| || ||||||||||||||||||    
T  683105 cgacacatgtgattacattcaattatgtcattttctca 683068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 9988706 - 9988742
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctca 232  Q
    ||||||||||||||| || ||||||||||||||||||    
T  9988706 gacacatgtgattacattcaattatgtcattttctca 9988742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 22596987 - 22597023
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctca 232  Q
    ||||||||||||||||||||||||||  |||||||||    
T  22596987 gacacatgtgattacgttgaattatgcaattttctca 22597023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 40224503 - 40224543
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcaca 234  Q
    ||||||||| ||||||| || ||||||||||||||||||||    
T  40224503 ccgacacatatgattacattaaattatgtcattttctcaca 40224543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 14332462 - 14332409
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||||||||||||    
T  14332462 ccgacatatgtgattacattgaattatgtcattttctca-aattttatcggtgtc 14332409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 40176655 - 40176604
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 247  Q
    ||||||||||||||| |||||| | |||||||||||| ||||||||||||||    
T  40176655 gacacatgtgattacattgaatgaagtcattttctcaaaattttatcggtgt 40176604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 31667479 - 31667443
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttct 230  Q
    ||||||||||||||||| || ||||||||||||||||    
T  31667479 ccgacacatgtgattacatttaattatgtcattttct 31667443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 43586010 - 43586063
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 247  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  43586010 ccgacacttgtgattacattgaattatgtcattttctcaaaattttatctgtgt 43586063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 18512149 - 18512201
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    ||||||||||||||| ||||||||| | ||||||||| |||||||||||||||    
T  18512149 gacacatgtgattacattgaattatattattttctcaaaattttatcggtgtc 18512201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 45000851 - 45000905
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 249  Q
    ||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||    
T  45000851 ccgacacatatgattacattgaattgtgtcattttctca-aattttatcggtgtca 45000905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 13501084 - 13501133
Alignment:
Q  195 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcgg 244  Q
    |||||| ||||||||| ||||||||||||||||||| | |||||||||||    
T  13501084 cgacacttgtgattacattgaattatgtcattttcttaaaattttatcgg 13501133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 39399962 - 39399905
Alignment:
Q  198 cacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 255  Q
    ||||||||| || |||||||||||||||||||| | ||||| |||||||||| |||||    
T  39399962 cacatgtgaataggttgaattatgtcattttctaaaaatttcatcggtgtcaatgtgt 39399905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 18571024 - 18570973
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 247  Q
    ||||||| ||||||| ||||||||||||||||||||| | | ||||||||||    
T  18571024 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 33884105 - 33884054
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggt 245  Q
    ||||||| ||| |||||  ||||| |||||||||||||||||||||||||||    
T  33884105 ccgacacttgtaattacactgaatcatgtcattttctcacaattttatcggt 33884054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 14373432 - 14373485
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 247  Q
    ||||||||||||||||| |||||||||||||||   ||| |||||||| |||||    
T  14373432 ccgacacatgtgattacattgaattatgtcattgcgtcaaaattttattggtgt 14373485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 5937428 - 5937479
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 247  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||    
T  5937428 gacacttgtgattacattgaattatgtcattttctcaaaattttatccgtgt 5937479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 249
Target Start/End: Original strand, 38134411 - 38134466
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtca 249  Q
    ||||||||| ||||||| ||||||||||||||||||||| | | ||||||||||||    
T  38134411 ccgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtca 38134466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 1885627 - 1885573
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    ||||||| ||||||||| ||||||||||||||||| ||| ||||||||| |||||    
T  1885627 ccgacacttgtgattacattgaattatgtcattttttcaaaattttatccgtgtc 1885573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 35238192 - 35238250
Alignment:
Q  197 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgtgt 255  Q
    |||| ||||||||  ||||||||||||||||||||| ||| |||||||||||| |||||    
T  35238192 acacgtgtgattatattgaattatgtcattttctcaaaatattatcggtgtcaatgtgt 35238250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 2144546 - 2144591
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctcacaattttat 241  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  2144546 gacacgtgtgattacattgaattatgtcattttctcaaaattttat 2144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 48964070 - 48964115
Alignment:
Q  197 acacatgtgattacgttgaattatgtcattttctcacaattttatc 242  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||    
T  48964070 acacttgtgattaaattgaattatgtcattttctcacaattttatc 48964115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 2143862 - 2143902
Alignment:
Q  198 cacatgtgattacgttgaattatgtcattttctcacaattt 238  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  2143862 cacatgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 25956499 - 25956442
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtcagtgt 253  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||||||||  ||||||||||    
T  25956499 ccgacacttgtgattacattgaattatgtcattt--tcacaattttatttgtgtcagtgt 25956442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 232
Target Start/End: Original strand, 44172898 - 44172933
Alignment:
Q  197 acacatgtgattacgttgaattatgtcattttctca 232  Q
    |||||||||||||| |||||||||||||||||||||    
T  44172898 acacatgtgattacattgaattatgtcattttctca 44172933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 22801746 - 22801799
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 247  Q
    ||||||| |||||||||  |||||||||||||| ||||| ||||| ||||||||    
T  22801746 ccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 22801799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 28635178 - 28635223
Alignment:
Q  197 acacatgtgattacgttgaattatgtcattttctcacaattttatc 242  Q
    |||||||||||||||||||||| ||  ||||||||| |||||||||    
T  28635178 acacatgtgattacgttgaattgtgaaattttctcaaaattttatc 28635223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 37776034 - 37775998
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctca 232  Q
    ||||||||||||||| || ||||||||||||||||||    
T  37776034 gacacatgtgattacatttaattatgtcattttctca 37775998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 24295142 - 24295196
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    ||||||| ||||||||| || |||| |||||||||||||||||||||||| ||||    
T  24295142 ccgacacttgtgattacattaaattgtgtcattttctcacaattttatcgatgtc 24295196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 27733898 - 27733848
Alignment:
Q  197 acacatgtgattacgttgaattatgtcattttctcacaattttatcggtgt 247  Q
    |||| ||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  27733898 acacttgtgattacattgaattatatcattttctcaaaattttatcggtgt 27733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 26915246 - 26915299
Alignment:
Q  195 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    |||||| ||||||||| || |||||||||||||||||| ||||||||| |||||    
T  26915246 cgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtc 26915299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 42874574 - 42874522
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| ||| |||||||    
T  42874574 gacacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtc 42874522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 31119140 - 31119097
Alignment:
Q  195 cgacacatgtgattacgttgaattatgtcattttctcacaattt 238  Q
    |||||| ||||||||| ||||||||||||||||||||| |||||    
T  31119140 cgacacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 31548293 - 31548352
Alignment:
Q  189 tgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||| |   |||||||||||    
T  31548293 tgacaccgacacatgtgattacattgaattatgtcattttatcaaataattatcggtgtc 31548352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 34073984 - 34074037
Alignment:
Q  195 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    |||||| | ||||||| || |||||||||||||| ||| |||||||||||||||    
T  34073984 cgacacttatgattacattaaattatgtcattttttcaaaattttatcggtgtc 34074037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 1586660 - 1586628
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcatttt 228  Q
    |||||||||||||||||| ||||||||||||||    
T  1586660 gacacatgtgattacgttcaattatgtcatttt 1586628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 32696418 - 32696382
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttct 230  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  32696418 ccgacacatgtgattatgttcaattatgtcattttct 32696382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 30080514 - 30080560
Alignment:
Q  202 tgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    ||||||||| ||||||||||||||||||||| ||||||||| |||||    
T  30080514 tgtgattacattgaattatgtcattttctcaaaattttatcagtgtc 30080560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 38784858 - 38784808
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctcacaattttatcggtg 246  Q
    ||||| ||||||||| ||||||||| ||||||| |||||||||||||||||    
T  38784858 gacacttgtgattacattgaattatatcattttttcacaattttatcggtg 38784808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 10009879 - 10009842
Alignment:
Q  195 cgacacatgtgattacgttgaattatgtcattttctca 232  Q
    |||||||||||||||| |||||||||||||||||||||    
T  10009879 cgacacatgtgattacattgaattatgtcattttctca 10009842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 10010608 - 10010561
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttat 241  Q
    |||||||||||||||||  |||||||||||||||| ||| ||||||||    
T  10010608 ccgacacatgtgattacaatgaattatgtcattttttcaaaattttat 10010561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 19167574 - 19167637
Alignment:
Q  187 tctgacgccgacacatgtgattacgttgaattatgtcattttct-cacaattttatcggtgtca 249  Q
    |||||| ||||||| ||||||||| ||||||| ||||||||| | || ||||||||||||||||    
T  19167574 tctgacaccgacacttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtca 19167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Original strand, 26205766 - 26205816
Alignment:
Q  195 cgacacatgtgattacgttgaattatgtcattttctcacaattttatcggt 245  Q
    |||||| | |||||||  |||||||||||||||||||| ||||||||||||    
T  26205766 cgacacctatgattacactgaattatgtcattttctcaaaattttatcggt 26205816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 309190 - 309158
Alignment:
Q  216 attatgtcattttctcacaattttatcggtgtc 248  Q
    ||||||||||||||||| |||||||||||||||    
T  309190 attatgtcattttctcaaaattttatcggtgtc 309158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 49179720 - 49179774
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    ||||||| ||||||||| | ||||||||||| ||||||| |||||||||||||||    
T  49179720 ccgacacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtc 49179774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 14338481 - 14338537
Alignment:
Q  187 tctgacgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 243  Q
    |||||| ||||||  ||||||||| ||||||||||||||||| ||| ||||||||||    
T  14338481 tctgacaccgacatttgtgattacattgaattatgtcattttttcaaaattttatcg 14338537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 20691385 - 20691335
Alignment:
Q  182 gtgtctctgacgccgacacatgtgattacgttgaattatgtcattttctca 232  Q
    |||| |||||| ||||||||| |||||||  ||||||||||||||||||||    
T  20691385 gtgtgtctgacaccgacacatatgattacactgaattatgtcattttctca 20691335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 44427895 - 44427857
Alignment:
Q  194 ccgacacatgtgattacgttgaattatgtcattttctca 232  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  44427895 ccgacacatgtgattacattggattatgtcattttctca 44427857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 9210832 - 9210868
Alignment:
Q  196 gacacatgtgattacgttgaattatgtcattttctca 232  Q
    ||||||||||||| | |||||||||||||||||||||    
T  9210832 gacacatgtgattccattgaattatgtcattttctca 9210868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 34409352 - 34409384
Alignment:
Q  199 acatgtgattacgttgaattatgtcattttctc 231  Q
    |||||||||||| ||||||||||||||||||||    
T  34409352 acatgtgattacattgaattatgtcattttctc 34409384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 42076762 - 42076802
Alignment:
Q  202 tgtgattacgttgaattatgtcattttctcacaattttatc 242  Q
    ||||||||| |||||||| ||||||||| ||||||||||||    
T  42076762 tgtgattacattgaattaggtcattttcccacaattttatc 42076802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 52558130 - 52558182
Alignment:
Q  191 acgccgacacatgtgattacgttgaattatgtcattttctcacaattttatcg 243  Q
    ||||| || ||||||||||| |||||||||||| |||||||| | ||||||||    
T  52558130 acgcccacgcatgtgattacattgaattatgtccttttctcaaatttttatcg 52558182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 18124 - 18167
Alignment:
Q  205 gattacgttgaattatgtcattttctcacaattttatcggtgtc 248  Q
    |||||| ||||||||||| ||||||||| |||||||||||||||    
T  18124 gattacattgaattatgttattttctcaaaattttatcggtgtc 18167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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