View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10802_low_13 (Length: 279)
Name: NF10802_low_13
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 27313935 - 27313673
Alignment:
| Q |
1 |
tatataaaacctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaatcgccttttatctaatg |
100 |
Q |
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| T |
27313935 |
tatataaaacctaataaactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaatcgcttttcatctaatg |
27313836 |
T |
|
| Q |
101 |
tttcatcttaattgatcatatacnnnnnnngcttcaaatataactccacctattcctcaacatgcattttcatttcaagacaacaacgagatccattaag |
200 |
Q |
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| T |
27313835 |
tttcatcttaattgatcatatactttttttgcttcaaatataactccacctatccctcaacatacattttcatttcaagacaacaatgagatccattgag |
27313736 |
T |
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| Q |
201 |
ttacatatggtggtgcctcagttaatcttattccaagagttatgttcaaaaagctagggaaag |
263 |
Q |
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| T |
27313735 |
ttacatatggtggtgcctcagtcaatcttattccatgagttatgttcaaaaagctagggaaag |
27313673 |
T |
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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 11827950 - 11828017
Alignment:
| Q |
1 |
tatataaaacctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca |
68 |
Q |
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| T |
11827950 |
tatataaaacctaattgactctaaactaataggcctaatagcatagcccattactttattatctaaca |
11828017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 31611487 - 31611539
Alignment:
| Q |
71 |
gattaggtttcaatcgccttttatctaatgtttcatcttaattgatcatatac |
123 |
Q |
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| T |
31611487 |
gattaggtttcaatagtttttcatcaaatgtttcatcttaatcgatcatatac |
31611539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 43516201 - 43516134
Alignment:
| Q |
1 |
tatataaaacctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca |
68 |
Q |
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| T |
43516201 |
tatataaaacctaatggactctaaactaacaggaccaatagcatagcccattattttattatcaaaca |
43516134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 11222642 - 11222685
Alignment:
| Q |
131 |
gcttcaaatataactccacctattcctcaacatgcattttcatt |
174 |
Q |
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| T |
11222642 |
gcttcaaatataacttcacctattcctcaacatacatcttcatt |
11222685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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