View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10802_low_2 (Length: 469)
Name: NF10802_low_2
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 464
Target Start/End: Original strand, 27520369 - 27520817
Alignment:
| Q |
16 |
ataccattggccacagttatttagagaaacctcgtacaaaa-aagttggtatggttggcttgtatatagtaatatataacagctagagggtgcatgcttg |
114 |
Q |
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| T |
27520369 |
ataccattggccacagttatttagagaaacctcgtacaaaaaaagttggtatggttggctagtatatagtaatatataacagctagagggtgcatgcttg |
27520468 |
T |
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| Q |
115 |
atcatacccataatttgtgataggtttatgtacatgatcttggccttccatttgtgcctcttcatccaccctactaaaagcattagaacttagaatnnnn |
214 |
Q |
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| T |
27520469 |
atcatacccataatttgtgataggtttatgtacatgatcttggccttccatttgtgcctcttcatccaccctactaaaagcattagaacttagaatcaaa |
27520568 |
T |
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| Q |
215 |
nnnnnnnnnnnnnnnntaataggcattccc---attttcttcattgagattggttacttagccacaatataatgttcatgctctattagggcatgttatt |
311 |
Q |
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| T |
27520569 |
aaaaggaataaaaaaataatacatattcccattattttcttcattgaaattggttacttagccacaatataatgttcatgctctattagggcatgttatt |
27520668 |
T |
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| Q |
312 |
atatatctgaacatctgaagttatcttctgagttactaactttaaagttatatatctaactttaaagtgaagaaattttta--tctgtttcattttttga |
409 |
Q |
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| T |
27520669 |
atatatctgaacatcttaagttatct----ag--aaaaaacctaaagttatatatctaactttaaagtgaagaaatttttatctctgtttcattttttga |
27520762 |
T |
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| Q |
410 |
gcaattgtttatacaagtgaaggagtaaagttgcaaaaacttcacctttgcttct |
464 |
Q |
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| T |
27520763 |
gcaattgtttatacaagtgaaggagtaaagttgcaaaaacttcacctttgtttct |
27520817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 35 - 338
Target Start/End: Original strand, 27499235 - 27499541
Alignment:
| Q |
35 |
tttagagaaacctcgtacaaaaaagttggtat---ggttggcttgtatatagtaatatataacagctagagggtgcatgcttgatcatacccataatttg |
131 |
Q |
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| T |
27499235 |
tttaaagaaacctcgtacaaaaaagttcgtatattggttggctagtaaatagtaatatagaacagctagagggtgcatgcatgatcatacccataatttg |
27499334 |
T |
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| Q |
132 |
tgataggtttatgtacatgatcttggccttccatttgtgcctcttcatccaccctactaaaagcattagaacttagaatnnnnnnnnnnnnnnnnnnnnt |
231 |
Q |
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| T |
27499335 |
tgataggtttatgtacatgatcttgtccttccttttgtgcctcttcatccaccctactaacagcattagaacttagaatcaaaagaaggaataaaaaaat |
27499434 |
T |
|
| Q |
232 |
aataggcattcccattttcttcattgagattggttacttagccacaatataatgttcatgctctattagggcatgttattatatatctgaacatctgaag |
331 |
Q |
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| T |
27499435 |
aataggcattcccattttcttcattgagattggttacttagccacaatataatgtccatgctctattagggcatgttattaaatatctgaacattttaag |
27499534 |
T |
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| Q |
332 |
ttatctt |
338 |
Q |
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||||||| |
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| T |
27499535 |
ttatctt |
27499541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 27514238 - 27514333
Alignment:
| Q |
245 |
attttcttcattgagattggttacttagccacaatata--atgttcatgctctattagggcatgttattatatatctgaacatctgaagttatctt |
338 |
Q |
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| T |
27514238 |
attttcttcattgaaattggttacttagccacaatatataatgtccatgctctattagggcatgttattatatatctgaacattttaagttatctt |
27514333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 362 - 459
Target Start/End: Original strand, 27499596 - 27499694
Alignment:
| Q |
362 |
tatatctaactttaaagtgaagaaatttttatctgt-ttcattttttgagcaattgtttatacaagtgaaggagtaaagttgcaaaaacttcacctttg |
459 |
Q |
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| T |
27499596 |
tatatctaactttaaagtgaagaaaatattttctatgttccatttttaagcaatggtttatacaagtgaaggagtaaagttacaaaaacatcacctttg |
27499694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 362 - 459
Target Start/End: Original strand, 27514388 - 27514486
Alignment:
| Q |
362 |
tatatctaactttaaagtgaagaaatttttatctgt-ttcattttttgagcaattgtttatacaagtgaaggagtaaagttgcaaaaacttcacctttg |
459 |
Q |
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| T |
27514388 |
tatatctaactttaaagtgaagaaaatattttctatgttccatttttaagcaatggtttatacaagtgaaggagtaaagttacaaaaacatcacctttg |
27514486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 27514161 - 27514200
Alignment:
| Q |
171 |
cctcttcatccaccctactaaaagcattagaacttagaat |
210 |
Q |
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| T |
27514161 |
cctcttcatccaccctactaaaagcattagaacttagaat |
27514200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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