View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10802_low_20 (Length: 239)
Name: NF10802_low_20
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9587261 - 9587469
Alignment:
| Q |
1 |
catcttctttttggactttgcatcctacctgccgattctcattcccttatttaaatcattttaaatttcatcatgttacataaagtaannnnnnnnnnnn |
100 |
Q |
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| T |
9587261 |
catcttctttttggactttgcatcctacctgccgattctcattcccttatttaaatcattttaaatttcatcatgttacataaagtaacttttttt---- |
9587356 |
T |
|
| Q |
101 |
nnnnnnnnnattctacattaaactatataatcttaaccatattctatatttacactattttccatcaccctataaatactcaactatataactcatgctt |
200 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9587357 |
----------ttttacattaaactatataatcttaaccatattctatatttacactattttccatcaccctataaatactcaactatataactcatgctt |
9587446 |
T |
|
| Q |
201 |
tcttaaaactaccacaaacatat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
9587447 |
tcttaaaactaccacaaacatat |
9587469 |
T |
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