View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10802_low_21 (Length: 238)
Name: NF10802_low_21
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_low_21 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 47072121 - 47072358
Alignment:
| Q |
1 |
tgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcattggattcttactttcaataattaatggtactgggtacatcaa |
100 |
Q |
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| T |
47072121 |
tgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcaatggattcttactttcaataattaatggtactgggtacatcaa |
47072220 |
T |
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| Q |
101 |
ttatatacattttggaagaaaggaagatgaactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaac |
200 |
Q |
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| T |
47072221 |
ttatatacattttggaagaaaggaagatcaacttgaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaac |
47072320 |
T |
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| Q |
201 |
tactactatctaactttcataatcaagatgctacatat |
238 |
Q |
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| T |
47072321 |
tactactatctaactttcataatcaagatgctacatat |
47072358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 33598227 - 33598435
Alignment:
| Q |
30 |
actgataccctattatgaatatgaagcattggattcttactttcaataattaatggtactgggtacatcaattatatacattttggaagaaaggaagatg |
129 |
Q |
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| T |
33598227 |
actgataccctattatgaatatgaagcaacgctttcttactttcaataatgaatggtactgggtacatcaattatatacattttggaagaaaggaagatc |
33598326 |
T |
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| Q |
130 |
aactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagat |
229 |
Q |
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| T |
33598327 |
aacttgaaactgaatcaaataacacaatgtaaactaaaagttaattaacatgaaatagaaagggcataaactactactatctaactttcataatcaagat |
33598426 |
T |
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| Q |
230 |
gctacatat |
238 |
Q |
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| T |
33598427 |
gctacatat |
33598435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 18232908 - 18232816
Alignment:
| Q |
136 |
aaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaaga |
228 |
Q |
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|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||||| |
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| T |
18232908 |
aaactgaatcaagtaacacaatgtaaactagaagctaacaaacatgaaatagaaatagcataaactactactatctaacatttataatcaaga |
18232816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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