View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10802_low_24 (Length: 228)
Name: NF10802_low_24
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 4636433 - 4636235
Alignment:
| Q |
15 |
agaaagaaggttcgtcaactttaccatcctatttgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcgatgatgaaaacattat |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4636433 |
agaatgaaggttcgtcaactttaccatcctatttgtgccgctactttacaatcgcagagatcagagcagccacaaaaaacttcgatgatgaaaacattat |
4636334 |
T |
|
| Q |
115 |
cggtgttggggggtttgggaatgtgtataaaggtttcatcgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgcaaa |
213 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4636333 |
cggtgttggggggtttgggaatgtgtacaaaggtttcattgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgcaaa |
4636235 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 4630455 - 4630290
Alignment:
| Q |
45 |
atttgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcgatgatgaaaacattatcggtgttggggggtttgggaatgtgtataa |
144 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||| ||||| || |||| ||| ||||| |||| ||||||||||| ||||| || |
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| T |
4630455 |
atttgtgtcgctactttacaatcgcggagatcaaagcagccacaaacaactttgacaatgatttcatcatcggatttggagggtttgggaacgtgtacaa |
4630356 |
T |
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| Q |
145 |
aggtttcatcgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgc |
210 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| |
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| T |
4630355 |
aggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctctcaacaaggtgc |
4630290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 4653066 - 4652901
Alignment:
| Q |
45 |
atttgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcgatgatgaaaacattatcggtgttggggggtttgggaatgtgtataa |
144 |
Q |
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||||||| |||| ||| |||||||| ||||||| |||||||||||| ||||||||||||| ||| ||||||||||| || ||||| || ||||| || |
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| T |
4653066 |
atttgtgtcgctccttcacaatcgcagagatcaaagcagccacaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtacaa |
4652967 |
T |
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| Q |
145 |
aggtttcatcgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgc |
210 |
Q |
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||||| |||||||||||||| || ||||||||||||||||||| || ||||||||||||||||| |
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| T |
4652966 |
aggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaacaaggtgc |
4652901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 209
Target Start/End: Complemental strand, 4661350 - 4661186
Alignment:
| Q |
45 |
atttgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcgatgatgaaaacattatcggtgttggggggtttgggaatgtgtataa |
144 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||| || || ||||| |||||||| || ||||| || |
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| T |
4661350 |
atttgtgccgctactttacaattgcagagatcagagcagccacaaaaaactttgatgatgatttcatcattggagttggagggtttggcaacgtgtacaa |
4661251 |
T |
|
| Q |
145 |
aggtttcatcgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtg |
209 |
Q |
| |
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||||| | |||||||| |||| |||||||| |||||||||| ||||||||||||||||||| |
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| T |
4661250 |
aggttgtgttgatggatcaacacttgttgcgattaaacgcctcaaatcgggctctcaacaaggtg |
4661186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 4666481 - 4666316
Alignment:
| Q |
45 |
atttgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcgatgatgaaaacattatcggtgttggggggtttgggaatgtgtataa |
144 |
Q |
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|
|||||||||| | ||||||||| || |||||||||||||||||||| ||||| || ||||| ||| ||||| ||||| |||||||| || ||||| || |
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| T |
4666481 |
atttgtgccggtcctttacaattgcagagatcagagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttggcaacgtgtacaa |
4666382 |
T |
|
| Q |
145 |
aggtttcatcgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgc |
210 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||||||||| || ||||||||||||||||| |
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| T |
4666381 |
aggttgtgtcgatggatccacacttgttgccataaaacgcctcaaatcaggctctcaacaaggtgc |
4666316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 4672184 - 4672021
Alignment:
| Q |
47 |
ttgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcgatgatgaaaacattatcggtgttggggggtttgggaatgtgtataaag |
146 |
Q |
| |
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|||||||| | |||||||||||| ||||||| |||||||||||| ||||||||||||| || ||||| ||||| |||||||| || |||| |||| |
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| T |
4672184 |
ttgtgccgttcctttacaatcgcagagatcaaagcagccacaaacaacttcgatgatgcttctatcatcggagttggagggtttggaaacctgtacaaag |
4672085 |
T |
|
| Q |
147 |
gtttcatcgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgc |
210 |
Q |
| |
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||| ||||||||||||||| ||||| |||||||| |||| ||||||||||| |||||||| |
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| T |
4672084 |
gttgtgtcgatggatccacacttgttgccataaaacggctcaaatcgggctctcagcaaggtgc |
4672021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 4643247 - 4643085
Alignment:
| Q |
48 |
tgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcgatgatgaaaacattatcggtgttggggggtttgggaatgtgtataaagg |
147 |
Q |
| |
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||||||||| |||||||||||| ||||||| |||||| ||||| ||||||||||||| || ||||| ||||| |||||||| || ||||| ||||| |
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| T |
4643247 |
tgtgccgctcctttacaatcgcagagatcaaagcagctacaaacaacttcgatgatgcttttatcatcggagttggagggtttggcaacgtgtacaaagg |
4643148 |
T |
|
| Q |
148 |
tttcatcgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgc |
210 |
Q |
| |
|
|| | ||||||||||||| |||||| | || ||||||| |||||||||||||||||||| |
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| T |
4643147 |
ttgtgttgatggatccacacttgttgcggttaagcgcctcaaatcgggctctcaacaaggtgc |
4643085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 4697732 - 4697814
Alignment:
| Q |
17 |
aaagaaggttcgtcaactttaccatcctatttgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcga |
99 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| ||||| || ||||| |||||||| |
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| T |
4697732 |
aaagaaggttcgtcaactttaccatcccatttgtgccgctattttacaatagcggagataagagccgctacaaacaacttcga |
4697814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 4846563 - 4846645
Alignment:
| Q |
17 |
aaagaaggttcgtcaactttaccatcctatttgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcga |
99 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||||||| |||||||| |||||||| |||| ||| ||||| |||||||| |
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| T |
4846563 |
aaagaaggttcctcaactttaccgtcccatttgtgccgctattttacaatagcggagataagagaagctacaaacaacttcga |
4846645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 4784375 - 4784543
Alignment:
| Q |
15 |
agaaagaaggttcgtcaactttaccatcctatttgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcgatgatgaaaacattat |
114 |
Q |
| |
|
||||| ||||||| |||| |||||||||| ||||||||||||| |||||||| ||||| || | |||||| ||||| |||||||| ||| || || |
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| T |
4784375 |
agaaacaaggttcctcaagtttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcat |
4784474 |
T |
|
| Q |
115 |
cggtgttggggggtttgggaatgtgtataaaggtttcatcgatggatccacacccgttgcgataaaacg |
183 |
Q |
| |
|
||| ||||| ||||| || |||||||| ||||||| || |||||| ||||| |||||||||||||| |
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| T |
4784475 |
cggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacg |
4784543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 4816804 - 4816972
Alignment:
| Q |
15 |
agaaagaaggttcgtcaactttaccatcctatttgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcgatgatgaaaacattat |
114 |
Q |
| |
|
||||| ||||||| |||| |||||||||| ||||||||||||| |||||||| ||||| || | |||||| ||||| |||||||| ||| || || |
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| T |
4816804 |
agaaacaaggttcctcaagtttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcat |
4816903 |
T |
|
| Q |
115 |
cggtgttggggggtttgggaatgtgtataaaggtttcatcgatggatccacacccgttgcgataaaacg |
183 |
Q |
| |
|
||| ||||| ||||| || |||||||| ||||||| || |||||| ||||| |||||||||||||| |
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|
| T |
4816904 |
cggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacg |
4816972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 207
Target Start/End: Original strand, 18926309 - 18926471
Alignment:
| Q |
45 |
atttgtgccgctactttacaatcgcggagatcagagcagccacaaaaaacttcgatgatgaaaacattatcggtgttggggggtttgggaatgtgtataa |
144 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | |||||||||||| ||||| |||||||| || ||||| ||||| |||||||| || |||||||| |
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| T |
18926309 |
atttgtgccgctactttacaattgcagagataaaagcagccacaaataactttgatgatgatttaatcatcggagttggagggtttggcaacgtgtataa |
18926408 |
T |
|
| Q |
145 |
aggtttcatcgatggatccacacccgttgcgataaaacgcctcaggtcgggctctcaacaagg |
207 |
Q |
| |
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||||||||||||| ||||||||||||||| |||||||| |||| | |||||||||||||| |
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| T |
18926409 |
aggtttcatcgataaatccacacccgttgcaataaaacgtctcaaaccaggctctcaacaagg |
18926471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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