View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10802_low_28 (Length: 202)
Name: NF10802_low_28
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 33015963 - 33015793
Alignment:
| Q |
17 |
agaagttagcgatcatggaagagcaaccagggccgccttgcagccaaatgagaagtggggtttgggaaagaggtgaggtggagttttgtgcttcatagaa |
116 |
Q |
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| T |
33015963 |
agaagttagcgatcatggaagagcaaccagggccgccttgcagccaaatgagaagtggggtttgggaaagaggtgaggtggagttttgtgcttcatagaa |
33015864 |
T |
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| Q |
117 |
agtatagaaaatggaggaattggaggtgtgacttactggaaggtaacctgatcttgtgggaagggcttctt |
187 |
Q |
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| T |
33015863 |
tgtatagaaaatggaggaattggaggtgtgacttactggaaggtaacctgatcttgtgggaagggcttctt |
33015793 |
T |
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Target: chr5 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 42548548 - 42548380
Alignment:
| Q |
17 |
agaagttagcgatcatggaagagcaaccagggccgccttgcagccaaatgagaagtggggtttgggaaagaggtgaggtggagttttgtgcttcatagaa |
116 |
Q |
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||||||| ||| |||||| ||||| ||||| || ||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||||||||||| |
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| T |
42548548 |
agaagttgccgaccatggaggagcagccaggaccaccttgaagccaaatgagaagtggagtttgtgagagaggtgaagtggagttctgtgcttcatagaa |
42548449 |
T |
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| Q |
117 |
agtatagaaaatggaggaattggaggtgtgacttactggaaggtaacctgatcttgtgggaagggcttc |
185 |
Q |
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| T |
42548448 |
tgtgtagaaaatggaggaagtggaggttggacttattggtaggtaacctgattttgtgggaagtgcttc |
42548380 |
T |
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