View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10802_low_5 (Length: 397)
Name: NF10802_low_5
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 33926397 - 33926766
Alignment:
| Q |
18 |
ctgttcctgttcctgttcagatccctgtgccggagacacttcagatctctgaaaccgctactctaacgaactacaacggcttcgtttctaaagcttctga |
117 |
Q |
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| T |
33926397 |
ctgttcctgttcctgttcagatccctgtgccggagacacttcagatctctgaaaccgctactctaacgaactacaacggcttcgtttctgaagcttctga |
33926496 |
T |
|
| Q |
118 |
aggttaccgttatgaactgaaaaccgatgaaacagttgcggtaagtaacgaatctaacgattctgttgcttacgtcgccgatgagattactccggtgaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33926497 |
aggttaccgttatgaactgaaaaccgatgaaacagttgcagtaagtaacgaatctaacgattctgttgcttacgtcgccgatgagattactccggtgaaa |
33926596 |
T |
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| Q |
218 |
acaacggttgttggagttgaggactccgttcatgtttccaatttgcagaagaaagtaccgttgcagttcgcatttaacgatgagaatgagaaacctccga |
317 |
Q |
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| T |
33926597 |
acaacggttgttggagttgaggactccgttcatgtttccaatttgcagaagaaagtaccgttgcagttcgcatttaacgatgagaatgagaaacctccga |
33926696 |
T |
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| Q |
318 |
tttcagctaggtctagtcaccggaaaactgttagatcaagtccagaaggtactgtcaccgtctctctctg |
387 |
Q |
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| T |
33926697 |
tttcagctaggtctagtcaccggaaaaccgttagatcaagtccagaaggtactgtcaccgtctctctctg |
33926766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 266 - 387
Target Start/End: Original strand, 22463767 - 22463889
Alignment:
| Q |
266 |
aagaaagtaccgttgcagttcgcattt-aacgatgagaatgagaaacctccgatttcagctaggtctagtcaccggaaaactgttagatcaagtccagaa |
364 |
Q |
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||||||| ||||||||||||| | ||| |||||||| ||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||| |
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| T |
22463767 |
aagaaagcaccgttgcagttcacgttttaacgatgacaatgagaaacctcagatttcagctaagtctagtcactggaaaactgttcgatcaagtccagaa |
22463866 |
T |
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| Q |
365 |
ggtactgtcaccgtctctctctg |
387 |
Q |
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||||||||||||| ||||||||| |
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| T |
22463867 |
ggtactgtcaccgcctctctctg |
22463889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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