View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10802_low_6 (Length: 395)
Name: NF10802_low_6
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 18563339 - 18562960
Alignment:
| Q |
1 |
gcagtataacaaaacgaatccctatcattttcaggcattttatcaaacacttgacatgcaagattcaaacatccacatttcgaatacatatcaaccaatg |
100 |
Q |
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| T |
18563339 |
gcagtataacaaaacgaatccctatcattttcaggcattttatcaaacacttgacatgcaagattcaaacatccacatttcgaatacatatcaacgaatg |
18563240 |
T |
|
| Q |
101 |
cagttcccacaaacctattcatcttaatcttattccttaacacaaaacaatgaacccaaaaaccttgactaacagcacctaaattagaacaagcactaat |
200 |
Q |
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| T |
18563239 |
cagttcccacaaacctattcatcttaatcttattccttaacacaaaacaatgaacccaaaaaccttgactaacagcacctaaattagaacaagcactaat |
18563140 |
T |
|
| Q |
201 |
caacgcaacaatcgtaacttcattaggccttattccaatcacttgcatgtcacgaaacaaatacaacgactctaacgaaaaatcagcatcatcgaaacta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18563139 |
caacgcaacaatcgtaacttcattaggccttattccaatcacttgcatgtcacgaaacaaatacaacgactctaacgaaaaatcagcatcatcaaaacta |
18563040 |
T |
|
| Q |
301 |
ttcgagtaactatgataactcgcactacgcgcgtaaccattcaaaataacattccacgtcgccaaatcaggttcattaat |
380 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18563039 |
ttcgagtaactatgataactcgaactacgcgcataagcattcaaaataacattccacgtagccaaatcaggttcattaat |
18562960 |
T |
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