View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10802_low_9 (Length: 360)
Name: NF10802_low_9
Description: NF10802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10802_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 101 - 357
Target Start/End: Original strand, 2177229 - 2177485
Alignment:
| Q |
101 |
tatggacatagaagagtgaatttatagtagttgattatgaagtatatgatatgatataaggataagcatatgatcgatatgtctagggtggcggggcaca |
200 |
Q |
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| T |
2177229 |
tatggacatagaagagtgaatttatagtagttgattatgaagtatatgatatgatataaggataagcatatgatcgatatgtctagggtggcggggcaca |
2177328 |
T |
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| Q |
201 |
aagggtcatggactaattacctgaannnnnnnctgctcaatatcaatgaagtgacctaggggtcaaggaagagaaaagtcatacatgtctttgctatgat |
300 |
Q |
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| T |
2177329 |
aagggtcatggactaattacctgaatttttttctgctcaatatcaatgaagtgacctaggggtcaaggaagagaaaagtcatacatgtctttgctatgat |
2177428 |
T |
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| Q |
301 |
acatagacacgtggactccacacaagcatattttttctttcctctcttcttctctct |
357 |
Q |
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| T |
2177429 |
acatagacacgtggatcccacacaagcacattttctctttcctctcctcttctctct |
2177485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2177130 - 2177173
Alignment:
| Q |
1 |
tcaagacaatcaaacaatatggtagtgatcatggttttatgttt |
44 |
Q |
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| T |
2177130 |
tcaagacaatcaaacaatatggtagtgatcatggttttatgttt |
2177173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 29239958 - 29240007
Alignment:
| Q |
308 |
cacgtggactccacacaagcatattttttctttcctctcttcttctctct |
357 |
Q |
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| T |
29239958 |
cacgtggaccccacacaagcacactttctctttcctctcctcttctctct |
29240007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 48647754 - 48647705
Alignment:
| Q |
308 |
cacgtggactccacacaagcatattttttctttcctctcttcttctctct |
357 |
Q |
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| T |
48647754 |
cacgtggactccgcacaagcacaatttctctttcctctcctcttctctct |
48647705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 3481719 - 3481775
Alignment:
| Q |
301 |
acatagacacgtggactccacacaagcatattttttctttcctctcttcttctctct |
357 |
Q |
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| T |
3481719 |
acatagtcacgtggaccccacacaagcacactttctctttcctcccatcttctctct |
3481775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 30801757 - 30801712
Alignment:
| Q |
312 |
tggactccacacaagcatattttttctttcctctcttcttctctct |
357 |
Q |
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| T |
30801757 |
tggaccccacacaagcacattttctctttcctctcatcttctctct |
30801712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 1758483 - 1758435
Alignment:
| Q |
309 |
acgtggactccacacaagcatattttttctttcctctcttcttctctct |
357 |
Q |
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| T |
1758483 |
acgtggactccacacaaacacattttctctttcatctcctcttctctct |
1758435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 3440052 - 3440100
Alignment:
| Q |
309 |
acgtggactccacacaagcatattttttctttcctctcttcttctctct |
357 |
Q |
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|||||||| || |||||||| ||||| ||||||||||| |||||||||| |
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| T |
3440052 |
acgtggaccccgcacaagcacattttctctttcctctcctcttctctct |
3440100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Original strand, 44454052 - 44454100
Alignment:
| Q |
309 |
acgtggactccacacaagcatattttttctttcctctcttcttctctct |
357 |
Q |
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| T |
44454052 |
acgtggatcccacacaagcacactttttctttcctctcatcttctctct |
44454100 |
T |
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