View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10805_high_1 (Length: 468)
Name: NF10805_high_1
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 156 - 452
Target Start/End: Complemental strand, 53071096 - 53070800
Alignment:
| Q |
156 |
aagaaaagtagtaatttattcgattaatcatctccactgcaatgaagagatttttatcttaaaagagaatatatcaagtatacaatgctgtttggttttg |
255 |
Q |
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| T |
53071096 |
aagaaaagtagtaatttattcgattaatcatctccactgcaatgaagagatttttatcttaaaagagaatatatcaagtatacaatgctgtttggttttg |
53070997 |
T |
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| Q |
256 |
gacatgtaaagatttgtcagttaaactaactgaaattaactttttaatttatatttattcttttaattagcacaaaaagttatcgtattcaatcctctag |
355 |
Q |
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| T |
53070996 |
gacatgtaaagatttgtcagttaaactaactgaaattaactttttaatttatatttattcttttaattagcacaaaaagttatcgtattcaatcctctag |
53070897 |
T |
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| Q |
356 |
tttggtttaatcactttggatcctctctcaaggaaaataaggggaaggaggagagtgaatatgttgtgatgaacgaaacacacacaaacttcgatat |
452 |
Q |
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| T |
53070896 |
tttggtttaatcactttggatcctctctctaggaaaacaaggggaaggaggagagtgaatatgttgtgatgaacgaaacacatacaaacttcgatat |
53070800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 53071216 - 53071100
Alignment:
| Q |
1 |
attgatttatgtcttaatcttgcattttcacaaaccaatataaactatgttagattcaattcaagatatgttgtccaaaaactatagtatatttttctgt |
100 |
Q |
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| T |
53071216 |
attgatttatgtcttaatcttgcattttcacaaaccaatataaactatatatg-ttagattcaagatatgttgtccaaaaactatagtatatttttctgc |
53071118 |
T |
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| Q |
101 |
tgtaatttgttgcattta |
118 |
Q |
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| T |
53071117 |
tgtaatttgttgcattta |
53071100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 35032455 - 35032376
Alignment:
| Q |
1 |
attgatttatgtcttaatcttgca-ttttcacaaaccaatataaactatgttagattcaattcaagatatgttgtccaaaaactata |
86 |
Q |
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||||| |||||||||||||||||| |||||||| ||| |||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
35032455 |
attgaattatgtcttaatcttgcatttttcacacacc--tataaactatgtta-----cattcaagatgtgttgtccaaaaactata |
35032376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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