View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10805_high_2 (Length: 309)
Name: NF10805_high_2
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 4243533 - 4243255
Alignment:
| Q |
14 |
agggtggagtagatcactacaaatgcggtatgccgacttaaccgtataattaccagttgttgttgttttccatattctggtgtcagacaacagacggtta |
113 |
Q |
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| T |
4243533 |
agggtggagtagatcactacaaatgcggtatgccgacttaaccgtataattaccagttgttgttgttttccatattctggtgtcagacaacagacggtta |
4243434 |
T |
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| Q |
114 |
tgtagagggatggagagtatagtagcagcgtcttggggattgaaaatggatgtaactatctgttggttccaagtgaggccttccagattcaacaagtaat |
213 |
Q |
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| T |
4243433 |
tgtagagggatggagagtatagcagcagcgtcttggggattgaaaatggatgtaactatttgttggttccaagagaggccttccagattcaacaagtaat |
4243334 |
T |
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| Q |
214 |
tcactgtaaggtcttcatgatgagccggcataggagttgagggtttgtgagaaggaagattacgtatccaaggcatggt |
292 |
Q |
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| T |
4243333 |
tcactgtaaggtcttcatgatgagccggcataggagttgagggtttgtgagaaggaagattacgtatccaaggcatggt |
4243255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 80 - 292
Target Start/End: Original strand, 33496080 - 33496291
Alignment:
| Q |
80 |
tttccatattctggtgtcagacaacagacggttatgtagagggatggagagtatagtagcagcgtcttggggattgaaaatggatgtaactatctgttgg |
179 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
33496080 |
tttccatattctggtgtcaaacaacagacggttatggagagggatggagagtatagcagcatcgtcttggggattgaaaatggatgtaactatctattgg |
33496179 |
T |
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| Q |
180 |
ttccaagtgaggccttccagattcaacaagtaattcactgtaaggtcttcatgatgagccggcataggagttgagggtttgtgagaaggaagattacgta |
279 |
Q |
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| T |
33496180 |
ttccaagagaggccttcc-gattcagcaagtaattcactgtaagatcttcatgaagagacggcataggagttgaaggtttgtgagaagaaagattacgta |
33496278 |
T |
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| Q |
280 |
tccaaggcatggt |
292 |
Q |
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| || |||||||| |
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| T |
33496279 |
ttcatggcatggt |
33496291 |
T |
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