View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10805_high_3 (Length: 308)
Name: NF10805_high_3
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 35479699 - 35479966
Alignment:
| Q |
14 |
gaagataagttggtgtttttcccaaccactaggacgcagaagaggttccctatcatagtgaagcgtagagtggagtccaaattatgtaattaattaaagt |
113 |
Q |
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| T |
35479699 |
gaagataagttggtgtttttcccaaccactaggacgcagaagaggttccctatcatagtgaagcgtagagtggagtccaaattatgtaattaattaaagt |
35479798 |
T |
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| Q |
114 |
gccagtataagtaataatacagttatatctactagtttagcagttcatatgtta-ttttttccttttatggttataagataaaatgtcttgttaaatcac |
212 |
Q |
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| T |
35479799 |
gccagtataagtaataatacagttatatctactagtttagtagttcatatgttatttttttccttttatggttataagataaaatgtcttgtt------- |
35479891 |
T |
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| Q |
213 |
ttggaaatgaaaatataatataatatagtttaatcagttcatgagcttggcataaatcctttaatgtataatatcatact |
292 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35479892 |
-----aatgaaaatataatataatatagtttaatcaggtcatgagcttggcataaatcctttaatgtataatatcatact |
35479966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 31557626 - 31557695
Alignment:
| Q |
14 |
gaagataagttggtgtttttcccaaccactaggacgcagaagaggttccctatcatagtgaagcgtagag |
83 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| |||| |
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| T |
31557626 |
gaagataagttggtgttttttccaaccactaggacgcagaagaggtatcctattttagtgaagcgcagag |
31557695 |
T |
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