View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10805_low_1 (Length: 540)
Name: NF10805_low_1
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 233 - 461
Target Start/End: Complemental strand, 35254674 - 35254446
Alignment:
| Q |
233 |
gtaatatgaatcctgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttaaaaaatg |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35254674 |
gtaatatgaatcctgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttcaaaaatg |
35254575 |
T |
|
| Q |
333 |
aagctcatgttaccggacattttccccctggtgtgtatgcttctgcttaattcattttacccaaaaatctttatttctttgatgctccttgcattatttc |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35254574 |
aagctcatgttaccggacattttccccctggtgtgtatgcttctgcttaattcattttacctaaaaatctttatttctttgatgctccttgcattatttc |
35254475 |
T |
|
| Q |
433 |
attggtcttatataatatggataattcag |
461 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35254474 |
attggtcttatataatatggataattcag |
35254446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 35248396 - 35248218
Alignment:
| Q |
18 |
gttatgcatgactctgcatggtcactcgctattttcttgcagtacttcactttctctcctttcattttctttcattaatcatcttcttcatctaagtgca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35248396 |
gttatgcatgactctgcatggtcactcgctattgtcttgcagtacttcactttctctcctttaattttctttcattaatcatcttcttcatctaagtgca |
35248297 |
T |
|
| Q |
118 |
acaaccatttcctttaacatgg---------acccaaaagaagaactgtgagtagagtacaatgctgcatgcatgcatg |
187 |
Q |
| |
|
| |||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35248296 |
agaaccatttcctttaacatggatacaaaaaatcccaaagaagaactgtgagtagagtacaatgctgcatgcatgcatg |
35248218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 35254894 - 35254716
Alignment:
| Q |
18 |
gttatgcatgactctgcatggtcactcgctattttcttgcagtacttcactttctctcctttcattttctttcattaatcatcttcttcatctaagtgca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35254894 |
gttatgcatgactctgcatggtcactcgctattgtcttgcagtacttcactttctctccttttattttctttcattaatcatcttcttcatctaagtgca |
35254795 |
T |
|
| Q |
118 |
acaaccatttcctttaacatgg---------acccaaaagaagaactgtgagtagagtacaatgctgcatgcatgcatg |
187 |
Q |
| |
|
| |||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35254794 |
agaaccatttcctttaacatggatacaaaaaatcccaaagaagaactgtgagtagagtacaatgctgcatgcatgcatg |
35254716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 233 - 364
Target Start/End: Complemental strand, 35248176 - 35248045
Alignment:
| Q |
233 |
gtaatatgaatcctgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttaaaaaatg |
332 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
35248176 |
gtaatacgaatcctgtgtgttctttgtagttttcaaaactttctgtgtgattacttcaagaagaagggattgtcaaacactgctaagattttcaaaaatg |
35248077 |
T |
|
| Q |
333 |
aagctcatgttaccggacattttccccctggt |
364 |
Q |
| |
|
|||||| ||| |||||||| ||| ||||||| |
|
|
| T |
35248076 |
aagctcgagtttccggacatattctccctggt |
35248045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 344
Target Start/End: Complemental strand, 35272724 - 35272626
Alignment:
| Q |
246 |
tgtgtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttaaaaaatgaagctcatgtta |
344 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||| | | ||||| ||||||| ||||||||||||| |||| |
|
|
| T |
35272724 |
tgtgtgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagctcaagtta |
35272626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 35279442 - 35279400
Alignment:
| Q |
149 |
aagaactgtgagtagagtacaatgctgcatgcatgcatgcatg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35279442 |
aagaactgtgagtagagtacaatgctgcatgcatgcatgcatg |
35279400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University