View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10805_low_11 (Length: 305)
Name: NF10805_low_11
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_low_11 |
 | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0140 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 16761 - 16892
Alignment:
| Q |
7 |
atatatgcatgcacaagctaaaactctgaaccatgggtactctaaacatggagaa------gtaccgggtacccacctgtatcggatacacgtatggtac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || |||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16761 |
atatatgcatgcacaagctaaaactctgaaccatggatattccaaacatggagaaatactggtaccgggtacccacctgtaccggatacacgtatggtac |
16860 |
T |
|
| Q |
101 |
ttgtaacttaatatcgaaccgtatctattttt |
132 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||| |
|
|
| T |
16861 |
ttataacttagtatcgaaccgtatctattttt |
16892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 43291312 - 43291274
Alignment:
| Q |
30 |
ctctgaaccatgggtactctaaacatggagaagtaccgg |
68 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
43291312 |
ctctgaagcatgggtactccaaacatggagaagtaccgg |
43291274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 30850211 - 30850173
Alignment:
| Q |
30 |
ctctgaaccatgggtactctaaacatggagaagtaccgg |
68 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
30850211 |
ctctgaagcatgggtactccaaacatggagaagtaccgg |
30850173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 32920853 - 32920815
Alignment:
| Q |
30 |
ctctgaaccatgggtactctaaacatggagaagtaccgg |
68 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
32920853 |
ctctgaagcatgggtactccaaacatggagaagtaccgg |
32920815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 445293 - 445333
Alignment:
| Q |
28 |
aactctgaaccatgggtactctaaacatggagaagtaccgg |
68 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
445293 |
aactctgaagcatgggtacttcaaacatggagaagtaccgg |
445333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University