View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10805_low_17 (Length: 243)
Name: NF10805_low_17
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 4639573 - 4639360
Alignment:
| Q |
14 |
agatgaacctcaagtaatggaccatttgaccataccaacaacaacaacaactgggaccagtttctcttttctctcttcacaacacacccaaaatgctttg |
113 |
Q |
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| T |
4639573 |
agatgaacctcaagtaatggaccatttgaccataccaacaacaacaacaactgggaccagtttctcttttctctcttcacaacacacccaaaatgctttg |
4639474 |
T |
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| Q |
114 |
ttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaatattaactcctcagaaatctatcatcacttcaagtgattcttcttctgcttcttca |
213 |
Q |
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| T |
4639473 |
ttttggtaactatcaaaacgaaattgatgaaaccaccaacgtaatattaactcctcagaaatctatcatcacttcaagtgattcttcttctgcttcttca |
4639374 |
T |
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| Q |
214 |
tgcaaccaccaaac |
227 |
Q |
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| T |
4639373 |
tgcaaccaccaaac |
4639360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 48511739 - 48511893
Alignment:
| Q |
76 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtaactatcaaaacgaaattgatgaaac---caccaacgtaatattaactcctcaga |
172 |
Q |
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| T |
48511739 |
tctcttttctctcttcacaacacacccaaaatgctttgttttggtgactatcaaaatgaaattcatgaaacaaccaccaacttaatattaactcctcaga |
48511838 |
T |
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| Q |
173 |
aatctatcatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaac |
227 |
Q |
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| T |
48511839 |
aatctattatcacttcaagtgattcttcttctgcttcttcatgcaaccaccaaac |
48511893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 48511603 - 48511666
Alignment:
| Q |
14 |
agatgaacctcaagtaatggaccatttgaccataccaacaacaacaacaactgggaccagtttctct |
80 |
Q |
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| T |
48511603 |
agatgaacttcaagtaatggaccatttgaccatac---caacaacaacatctgggaccagtttctct |
48511666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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