View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10805_low_21 (Length: 239)
Name: NF10805_low_21
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37809555 - 37809776
Alignment:
| Q |
1 |
cttatcattctatgccactttcttaattacttcaatttgtttatgccaaactctagcatcaagattcttaatcacagtttggttaaccaatacgtgtccg |
100 |
Q |
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| T |
37809555 |
cttatcattctatgccactttcttaattacttcaatttttttatgccaaactctagcatcaag-ttattaatcacagtttggttaaccaatacgtgtccg |
37809653 |
T |
|
| Q |
101 |
gcaatgacaacaaagactcagacactcttttttgactgattctgtgactgcacgacattccttatgcactaaaaggaaccaaaacgaaaagaaaccaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37809654 |
gcaatgacaacaaagactcagacactcttttttgactgattctgagactgcacgacattccttatgcactaaaaggaaccaaaatgaaaagaaaccaaca |
37809753 |
T |
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| Q |
201 |
aggattgcaaaatttaaaaacca |
223 |
Q |
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| T |
37809754 |
acgattgcaaaatttaaaaacca |
37809776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 37635972 - 37635818
Alignment:
| Q |
71 |
atcacagtttggttaaccaatacgtgtccggcaatgacaacaaagactcagacactcttttttgactgattctgtgactgcacgacattccttatgcact |
170 |
Q |
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|||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
37635972 |
atcatagtctggttaaccaatacgtgtccagcaatgacaacaaagactcagacactcttttgtgactgaatctgcaactgcacgacattccttatgcact |
37635873 |
T |
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| Q |
171 |
aaaaggaacc---aaaacgaaaagaaaccaacaaggattgcaaaatttaaaaacc |
222 |
Q |
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| T |
37635872 |
aaaaggaaccaaaaaaacgaaaagaaaccaacagagattgcagaatttaaaaacc |
37635818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 37646384 - 37646332
Alignment:
| Q |
22 |
cttaattacttcaatttgtttatgccaaactctagcatcaagattcttaatca |
74 |
Q |
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|||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37646384 |
cttatttactttaatttctttatgccaaactctagcatcaagattcttaatca |
37646332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 37814459 - 37814511
Alignment:
| Q |
22 |
cttaattacttcaatttgtttatgccaaactctagcatcaagattcttaatca |
74 |
Q |
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|||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37814459 |
cttatttactttaatttctttatgccaaactctagcatcaagattcttaatca |
37814511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 37646264 - 37646222
Alignment:
| Q |
181 |
aaaacgaaaagaaaccaacaaggattgcaaaatttaaaaacca |
223 |
Q |
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| T |
37646264 |
aaaacgaaaagaaaccaacaaggattgcagaatttaaaaacca |
37646222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 37814579 - 37814621
Alignment:
| Q |
181 |
aaaacgaaaagaaaccaacaaggattgcaaaatttaaaaacca |
223 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
37814579 |
aaaacgaaaagaaaccaacaaggattgcagaatttaaaaacca |
37814621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 37636517 - 37636461
Alignment:
| Q |
3 |
tatcattctatgccactttcttaattacttcaatttgtttatgccaaactctagcat |
59 |
Q |
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||||||||||||||||||| ||| |||||||||||| || ||||||||| ||||||| |
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| T |
37636517 |
tatcattctatgccacttttttatttacttcaatttattcatgccaaacactagcat |
37636461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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