View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10805_low_22 (Length: 229)
Name: NF10805_low_22
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_low_22 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 33716042 - 33715814
Alignment:
| Q |
1 |
tttcctgagtcagatagttaaaattgggaagattgtgagaagtttgaatttcaggaggagaatgaagatgttgatgatgaacctgttagaggaactagat |
100 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33716042 |
tttcctgagttagatagttggaattgggaagattgtgagaagtttgaatttcaggaggagaatgaagatgttgatgttgaacctgttagaggaactagat |
33715943 |
T |
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| Q |
101 |
cactttcagacatctaccaaaggtgcaacgttgctttcatggaaccagaaggatatgacaaagctagatatgaattcttgacacaaatgcttggtgtatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33715942 |
cactttcagacatctaccaaaggtgcaacgttgctttcatggaaccagaaggatatgacaaagctagatatgaattcttgacacaaatgcttggtgtatt |
33715843 |
T |
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| Q |
201 |
cagtttcaaaggcaaggaggagtgttgac |
229 |
Q |
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| T |
33715842 |
cagtttcagagtcaaggaggagtgttgac |
33715814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 28697545 - 28697317
Alignment:
| Q |
1 |
tttcctgagtcagatagttaaaattgggaagattgtgagaagtttgaatttcaggaggagaatgaagatgttgatgatgaacctgttagaggaactagat |
100 |
Q |
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|||| |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28697545 |
tttcttgagtcagattgttggaattgggaagattgtgagaagtttaaatttcaggaggagaatgaagatgttgatgatgaacctgttagaggaattagat |
28697446 |
T |
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| Q |
101 |
cactttcagacatctaccaaaggtgcaacgttgctttcatggaaccagaaggatatgacaaagctagatatgaattcttgacacaaatgcttggtgtatg |
200 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28697445 |
cactttcagacatctaccaaaggtgcaacgttgttgtcatggaaccagaaggatatgataaagctagatatgaattcttgacacaaatgcttggtgtatg |
28697346 |
T |
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| Q |
201 |
cagtttcaaaggcaaggaggagtgttgac |
229 |
Q |
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| T |
28697345 |
cagtttcagagtcaaggaggagtgttgac |
28697317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 628059 - 628285
Alignment:
| Q |
1 |
tttcctgagtcagatagttaaaattgggaagattgtgagaagtttgaatttcaggaggagaatgaagatgttgatgatgaacctgttagaggaactagat |
100 |
Q |
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|||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
628059 |
tttcttgagtcaaatatttggaattgggaagattgtgagaagtttgaatttcaggaggagaatgaagatgttgatggtgaacctgttagaggaactagat |
628158 |
T |
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| Q |
101 |
cactttcagacatctaccaaaggtgcaacgttgctttcatggaaccagaaggatatgacaaagctagatatgaattcttgacacaaatgcttggtgtatg |
200 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
628159 |
cactttcagacatctaccaaaggtgcaacgtt--tgtcatggaaccagaaggatatgataaagctatatatgaattcttgacacaaatgcttggtgtatg |
628256 |
T |
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| Q |
201 |
cagtttcaaaggcaaggaggagtgttgac |
229 |
Q |
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| T |
628257 |
cagtttcagagtcaaggaggagtgttgac |
628285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27711814 - 27712038
Alignment:
| Q |
1 |
tttcctgagtcagatagttaaaattgggaagattgtgagaagtttgaatttcaggaggagaatgaagatgttgatgatgaacctgttagaggaactagat |
100 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
27711814 |
tttcttgagtcagatagttggaattgggaagattgtgagaagtttgaatttcaggaggagaatgaagatgttgatgatgaacctattaaaggaactagat |
27711913 |
T |
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| Q |
101 |
cactttcagacatctaccaaaggtgcaacgttgctttcatggaaccagaaggatatgacaaagctagatatgaattcttgacacaaatgcttggtgtatg |
200 |
Q |
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||||||||||||| ||||||||||||||||| | | ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27711914 |
cactttcagacatgtaccaaaggtgcaacgtcgttgtcatggaactagaaggatatgataaagctagatatgaattcttgacacaaatgcttggtgtatg |
27712013 |
T |
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| Q |
201 |
cagtttcaaaggcaaggaggagtgt |
225 |
Q |
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| T |
27712014 |
cagtttcagagtcaaggaggagtgt |
27712038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 31083433 - 31083516
Alignment:
| Q |
60 |
gaatgaagatgttgatgatgaacctgttagaggaactagatcactttcagacatctaccaaaggtgcaacgttgctttcatgga |
143 |
Q |
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|||||||||||| || ||||||||||| |||||| ||||||||||| |||||||| || ||||| || ||||| ||||||| |
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| T |
31083433 |
gaatgaagatgtagacgatgaacctgtcagaggagtaagatcactttctgacatctatcagaggtgtaatgttgcgatcatgga |
31083516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 9308656 - 9308739
Alignment:
| Q |
60 |
gaatgaagatgttgatgatgaacctgttagaggaactagatcactttcagacatctaccaaaggtgcaacgttgctttcatgga |
143 |
Q |
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|||||||||||| || ||||||||||| |||||| ||||||||||| |||||||| || ||||| || ||||| ||||||| |
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| T |
9308656 |
gaatgaagatgtagacgatgaacctgtcagaggagtaagatcactttctgacatctatcagaggtgtaatgttgcgatcatgga |
9308739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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