View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10805_low_4 (Length: 411)
Name: NF10805_low_4
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 47884452 - 47884839
Alignment:
| Q |
19 |
tggaaacccttcacttgatttgaatcatcgtgtttcaaatcttagatttaagggaaaacaacatgtggttaaggttagagcaacagtggaagtgggtggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47884452 |
tggaaacccttcacttgatttgaatcatcgtgtttcaaatcttagatttaagggaaaacaacatgttgttaaggttagagcaacagtggaagtgggtggt |
47884551 |
T |
|
| Q |
119 |
gtggaggatttnnnnnnnngaagaagcaatgttgcattggagggaaatttaggtttggatatggtttcagaaggagagttaatggtgaagggttttagag |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47884552 |
gtggaggatttaaaaaaaagaagaagcaatgttgcattggagggaaatttgggtttggatatggtttcagaaggagagttaatggtgaagggttttagag |
47884651 |
T |
|
| Q |
219 |
ggttgaggaagacaaagcttgtgtgtactgttggtcctgcttgtagttcattggaggatctagagaagttggcattgggaggaatgaatgttgctaggct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47884652 |
ggttgaggaagacaaagcttgtgtgtactgttggtcctgcttgtagttcattggaggatctagagaagttggcattgggaggaatgaatgttgctaggct |
47884751 |
T |
|
| Q |
319 |
taatatgtgtcatggtactagagaatggcaccgtgatgttattaggaagattaagaagcttaatgaggaaaagggtttctctgcttct |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47884752 |
taatatgtgtcatggtactagagaatggcaccgtgatgttattaggaagattaagaagcttaatgaggaaaagggtttctctgtttct |
47884839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 47880758 - 47880846
Alignment:
| Q |
139 |
aagaagcaatgttgcattggagggaaatttaggtttggatatggtttcagaaggagagttaatggtgaagggttttagagggttgaggaaga |
230 |
Q |
| |
|
||||||||||||||||||| |||||| ||| || |||||||||||||| ||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
47880758 |
aagaagcaatgttgcattgtagggaactttggggttggatatggtttc---aggagagttaatggtgaagggtttttgaaggttgaggaaga |
47880846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University