View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10805_low_5 (Length: 361)
Name: NF10805_low_5
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 41158497 - 41158828
Alignment:
| Q |
19 |
tgatctagaggaccttttgagagcttctgctcagattcttggaaaaggtaattttggtacaacatacaaggctgctttggaggatataaccactgtggtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41158497 |
tgatctagaggaccttttgagagcttctgctcagattcttggaaaaggtaattttggtacaacatacaaggctgctttggaggatataaccactgtggtg |
41158596 |
T |
|
| Q |
119 |
gtgaagaggttgaaagaggttactgttggaaaaagggagtttgaacagcagatggaagtgatagggaaaattaagcatgaaaatgtggatggattaagag |
218 |
Q |
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| T |
41158597 |
gtgaagaggttgaaagaggttactgttggaaaaagggagtttgaacagcagatggaagtggtagggaaaattaagcatgaaaatgtggatggattaagag |
41158696 |
T |
|
| Q |
219 |
cttattattattcaaaggatgataaattagtagtttctgattattatcaacaaggcagtgtttcttccatcttacatggtatgttcaaccttttctctta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41158697 |
cttattattattcaaaggatgataaattagtagtttctgattattatcaacaaggcagtgtttcttccatcttacatggtatgttcaaccttttctctta |
41158796 |
T |
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| Q |
319 |
tatgtacaaaaatttgcagttacatcatctct |
350 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
41158797 |
tatatacaaaaatttgcagttacatcatctct |
41158828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 41154610 - 41154907
Alignment:
| Q |
19 |
tgatctagaggaccttttgagagcttctgctcagattcttggaaaaggtaattttggtacaacatacaaggctgctttggaggatataaccactgtggtg |
118 |
Q |
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|||| ||||||| |||||||||||||| ||| |||||||||||| |||| ||||||||||||||| ||||||||| | |||||| ||||| |||| |
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| T |
41154610 |
tgatttagaggatcttttgagagcttcagctgagattcttggaaggggtacttttggtacaacatataaggctgctatagaggatgcgaccacggtggca |
41154709 |
T |
|
| Q |
119 |
gtgaagaggttgaaagaggttactgttggaaaaagggagtttgaacagcagatggaagtgatagggaaaattaagcatgaaaatgtggatggattaagag |
218 |
Q |
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| T |
41154710 |
gtgaagaggttgaaagaggttactgttgggaaaagggaatttgaacagcagatggaactgattgggaaaattaagcatgaaaatgtggatgcattaagag |
41154809 |
T |
|
| Q |
219 |
cttattattattcaaaggatgataaattagtagtttctgattattatcaacaaggcagtgtttcttccatcttacatggtatgttcaaccttttctct |
316 |
Q |
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|||| ||||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41154810 |
cttactattattcaaaggatgagaaactagttgtatctgattattatcaacaaggcagtgtttcttccatcttacatggtatgttcaaccttttctct |
41154907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 28223082 - 28223024
Alignment:
| Q |
116 |
gtggtgaagaggttgaaagaggttactgttggaaaaagggagtttgaacagcagatgga |
174 |
Q |
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|||||||| ||||||||||| ||| |||||||||| ||||||||| ||||||||||| |
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| T |
28223082 |
gtggtgaaaaggttgaaagaagttgtggttggaaaaaaggagtttgatcagcagatgga |
28223024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 304
Target Start/End: Complemental strand, 9837551 - 9837369
Alignment:
| Q |
122 |
aagaggttgaaagaggttactgttggaaaaagggagtttgaacagcagatggaagtgatagggaaaattaagcatgaaaatgtggatggattaagagctt |
221 |
Q |
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||||| ||||| |||||||| ||||| ||| | || ||||||||||||||||| || | || || |||| ||||||||||||||||| |||||| |||| |
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| T |
9837551 |
aagagattgaaggaggttacggttgggaaacgcgaatttgaacagcagatggagatggtgggaaagattaggcatgaaaatgtggatgcattaagggctt |
9837452 |
T |
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| Q |
222 |
attattattcaaaggatgataaattagtagtttctgattattatcaacaaggcagtgtttcttccatcttacatggtatgttc |
304 |
Q |
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|||| ||||||||||| || ||| | | |||| ||||| |||| ||||||||||||| || | || |||||||||| |||| |
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| T |
9837451 |
attactattcaaaggaagaaaaacttatggtttatgatttttatgaacaaggcagtgtctcagcaatgttacatggtaagttc |
9837369 |
T |
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