View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10805_low_6 (Length: 353)
Name: NF10805_low_6
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 343
Target Start/End: Original strand, 2928858 - 2929180
Alignment:
| Q |
21 |
aaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattggga |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928858 |
aaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattggga |
2928957 |
T |
|
| Q |
121 |
aaacatccgacagacatattagttnnnnnnnctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgt |
220 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928958 |
aaacatccgacagacatattagttaaaaaaactaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgt |
2929057 |
T |
|
| Q |
221 |
ttctctctctcagcaatgcatcaataatattgttgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttg |
320 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2929058 |
ttctctctctcagcaatgcatcaataatattattgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttg |
2929157 |
T |
|
| Q |
321 |
tttgtattcttcaaagccctttg |
343 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
2929158 |
tttgtattcttcaaagccctttg |
2929180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 2310183 - 2309867
Alignment:
| Q |
18 |
aacaaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattg |
117 |
Q |
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|||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||| |
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| T |
2310183 |
aacaaaatcataaaatacctcacgtgcaattaaggttgctttctctgcatcacttggaaaaggcttaaccaaatcccagcttagacctatcttcccatta |
2310084 |
T |
|
| Q |
118 |
ggaaaacatccgacagacatattagttnnnnnnnctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattt |
217 |
Q |
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| ||||||| | |||| |||| || | |||||| |||||||||||||||||||||||||||||| || || |||||| ||||||||| |
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| T |
2310083 |
gcaaaacatgtgccagatatataaggtaaaaaaactaccacaacctcccaatttaatccatccaaatgtgacatatta------gattcagggctcattt |
2309990 |
T |
|
| Q |
218 |
tgtttctctctctcagcaatgcatcaataatattgttgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacct |
317 |
Q |
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| ||||| ||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
2309989 |
tctttctttctctttgcaatgcatcaattatattattgagaatctttgtatgccttacactttcttgataggtttgaggcattgtacgtccttcaaacct |
2309890 |
T |
|
| Q |
318 |
ttgtttgtattcttcaaagccct |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
2309889 |
ttgtttgtattcttcaaagccct |
2309867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 21959878 - 21959920
Alignment:
| Q |
30 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
72 |
Q |
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||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
21959878 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
21959920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 904889 - 904847
Alignment:
| Q |
30 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
72 |
Q |
| |
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||||||||||||| |||| ||||||||| |||||||||||||| |
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| T |
904889 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
904847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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