View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10805_low_7 (Length: 349)
Name: NF10805_low_7
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 21371532 - 21371852
Alignment:
| Q |
18 |
ggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccacgttatggttgtgcattcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21371532 |
ggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccgcgttatggttgtgcattcc |
21371631 |
T |
|
| Q |
118 |
ttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371632 |
ttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaac |
21371731 |
T |
|
| Q |
218 |
atttgtttcatgtcaatattggatgagtacaatgtttaatagtaaaattattggacttgctaatggtattgctgctggttggggtaatatgggtggtggg |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21371732 |
atttgtttcatgtcaatattggatgagtactatgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatatgggtggtggg |
21371831 |
T |
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| Q |
318 |
gccactcagcttattatgcct |
338 |
Q |
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||||||||||||||||||||| |
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| T |
21371832 |
gccactcagcttattatgcct |
21371852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 21386025 - 21385705
Alignment:
| Q |
18 |
ggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccacgttatggttgtgcattcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21386025 |
ggtaacgccggagtcgcttcggtttcaggtagtatattctcaaggcttgcaatgggtgcaatttgtgacctattaggtccgcgttatggttgtgcattcc |
21385926 |
T |
|
| Q |
118 |
ttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385925 |
ttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggttatatagcagttaggtttatgattggtttctctttggcaac |
21385826 |
T |
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| Q |
218 |
atttgtttcatgtcaatattggatgagtacaatgtttaatagtaaaattattggacttgctaatggtattgctgctggttggggtaatatgggtggtggg |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21385825 |
atttgtttcatgtcaatattggatgagtactatgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatatgggtggtggg |
21385726 |
T |
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| Q |
318 |
gccactcagcttattatgcct |
338 |
Q |
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||||||||||||||||||||| |
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| T |
21385725 |
gccactcagcttattatgcct |
21385705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 166 - 307
Target Start/End: Complemental strand, 48674302 - 48674164
Alignment:
| Q |
166 |
atgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatagtaaaat |
265 |
Q |
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||||| |||| | ||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||| || || |
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| T |
48674302 |
atgcttctggatgtatagcagttaggttcatgattggtttctctttggcaacttttgtttcttaccaatattggatgagt---atgtttaataggaagat |
48674206 |
T |
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| Q |
266 |
tattggacttgctaatggtattgctgctggttggggtaatat |
307 |
Q |
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||||||||||| |||||| | ||||||||||||||||||||| |
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| T |
48674205 |
tattggacttgttaatgggactgctgctggttggggtaatat |
48674164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 259
Target Start/End: Original strand, 36199810 - 36199965
Alignment:
| Q |
102 |
tatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaa-atgctgctggttatatagcagttaggtttatgatt |
200 |
Q |
| |
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||||||||||| || |||||||||||| | || ||||||| ||||||||| |||||| |||| ||||| |||| ||||||| ||||||||| |||||| |
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| T |
36199810 |
tatggttgtgctttacttataatgctatctgctccaacag-gttttgtatttcattt--tgaatgatgcttctggatatatagtagttaggttcatgatt |
36199906 |
T |
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| Q |
201 |
ggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatag |
259 |
Q |
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||||| ||||| ||||| |||||||| || |||||| ||| ||||| | ||||||||| |
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| T |
36199907 |
ggtttgtctttagcaacttttgtttcttgccaatatcggacgagtaagacgtttaatag |
36199965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 691479 - 691421
Alignment:
| Q |
249 |
atgtttaatagtaaaattattggacttgctaatggtattgctgctggttggggtaatat |
307 |
Q |
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||||||||| | || ||||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
691479 |
atgtttaattggaagattattggacttgtcaatgggactgctgctggttggggtaatat |
691421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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