View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10805_low_8 (Length: 317)
Name: NF10805_low_8
Description: NF10805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10805_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 30049537 - 30049243
Alignment:
| Q |
19 |
tgattaactgttatgggaggctcctgctgaatctcaacttcttgttgaactcgttcttcatcaatattgcaggaacaa-----gcacttctccttcttga |
113 |
Q |
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| T |
30049537 |
tgattaactgttatgggaggctcctgctgaatctcaacttcttgttgaactcgttcttcatcaatattgcaggaacaactagagcacttctccttcttga |
30049438 |
T |
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| Q |
114 |
ttataccaaaaactacactctttgctttaatcagaaatagccaaatcttcctgctcccattaaaggaacttctaatggactacatgcatccgaatatact |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30049437 |
ttataccaaaaacttcactctttgctttaatcagaaatagccaaatcttcctgctcccattaaaggaacttctaatggactacatgcatcagaatatact |
30049338 |
T |
|
| Q |
214 |
acattcaacacctcagttaacctatgagttgtatttgcactgaatgcatttttaggttgcttgtctatc-aagaaaatatcacatactttctctg |
307 |
Q |
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| T |
30049337 |
acattcaacacctctgttaatctatgagttgtatttgcactgaatgcatttctaggttgcttgtttatcaaaaaaaatatcacatattttctctg |
30049243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 22929900 - 22930016
Alignment:
| Q |
168 |
tcccattaaaggaacttctaatggactacatgcatccgaatatactacattcaacacctcagttaacctatgagttgtatttgcactgaatgcattttta |
267 |
Q |
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||||||| ||||||| |||||||||| | | |||| ||||||||||||||| |||||| || | |||||||||||| | | |||||||| || || |
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| T |
22929900 |
tcccattgaaggaacctctaatggaccatttacatcaaaatatactacattcagcacctcttttgatctatgagttgtagtagagatgaatgcagttcta |
22929999 |
T |
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| Q |
268 |
ggttgcttgtctatcaa |
284 |
Q |
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| T |
22930000 |
ggttgcttgcctatcaa |
22930016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 15566711 - 15566751
Alignment:
| Q |
26 |
ctgttatgggaggctcctgctgaatctcaacttcttgttga |
66 |
Q |
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| T |
15566711 |
ctgttatgggaggctcctgccgagtctcatcttcttgttga |
15566751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 30860355 - 30860423
Alignment:
| Q |
26 |
ctgttatgggaggctcctgctgaatctcaacttcttgttgaactcgttcttcatc-aatattgcaggaa |
93 |
Q |
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| T |
30860355 |
ctgttataggaggctcctcttgagtatcaacttattgttggacttgttcttcatcaaatattgcaggaa |
30860423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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