View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10806_high_10 (Length: 231)
Name: NF10806_high_10
Description: NF10806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10806_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 42728155 - 42728379
Alignment:
| Q |
1 |
catacattcctaaatgaacttattataacatatgaccaagaacgatgtatgtaaactaccgtcgttataggcaccaccatatctacacctgagtttatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42728155 |
catacattcctaaatgaacttattataacatatgaccaagaacgatgtatgtaaactaccgtcgttataggcaccaccatatctacacctgagtttatct |
42728254 |
T |
|
| Q |
101 |
atgaaacgtgtcgctcaatacttgtgtgcctaaaacctatcttgcactttttaataattnnnnnnntactttgccaaaaacacatttggataatgtttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42728255 |
atgaaacgtgtcgctcaatacttgtgtgcctaaaacctatcttgcactttttaataattaaaaaaatactttgccaaaaacacatttggataatgtttga |
42728354 |
T |
|
| Q |
201 |
atttatgtctatgtcaactgatgtg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42728355 |
atttatgtctatgtcaactgatgtg |
42728379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University