View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10806_high_2 (Length: 283)

Name: NF10806_high_2
Description: NF10806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10806_high_2
NF10806_high_2
[»] chr6 (16 HSPs)
chr6 (107-268)||(15505038-15505199)
chr6 (107-268)||(15985244-15985405)
chr6 (107-268)||(15512228-15512389)
chr6 (107-268)||(16328229-16328387)
chr6 (107-183)||(16351757-16351833)
chr6 (11-56)||(15504942-15504987)
chr6 (11-56)||(15985450-15985495)
chr6 (200-263)||(16351653-16351716)
chr6 (11-54)||(16367792-16367835)
chr6 (23-56)||(16351883-16351916)
chr6 (107-148)||(16367735-16367776)
chr6 (23-54)||(16328427-16328458)
chr6 (11-54)||(16332571-16332616)
chr6 (116-158)||(16373495-16373537)
chr6 (121-158)||(16332476-16332513)
chr6 (116-157)||(16364692-16364733)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 107 - 268
Target Start/End: Original strand, 15505038 - 15505199
Alignment:
Q  107 ttgccatgaagcctacattagttactaccctttgtttcctcctcttttccttcaccatctactttccattagcctttacacatgcaaataaaattatcgt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15505038 ttgccatgaagcctacattagttactaccctttgtttcctcctcttttccttcaccatctactttccattaccctttacacatgcaaataaaattatcgt 15505137  T
Q  207 caaagatatatttgggaaccccgttgttcctagtggcagctactatatttggcctgattact 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15505138 caaagatatatttgggaaccccgttgttcctagtggcagctactatatttggcctgattact 15505199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 107 - 268
Target Start/End: Complemental strand, 15985405 - 15985244
Alignment:
Q  107 ttgccatgaagcctacattagttactaccctttgtttcctcctcttttccttcaccatctactttccattagcctttacacatgcaaataaaattatcgt 206  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  15985405 ttgccatgaagcctacattagttaccaccctttgtttcctcctcttttccttcaccatctactttccattaccctttacacatgcaaataaatttatcgt 15985306  T
Q  207 caaagatatatttgggaaccccgttgttcctagtggcagctactatatttggcctgattact 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15985305 caaagatatatttgggaaccccgttgttcctagtggcagctactatatttggcctgattact 15985244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 107 - 268
Target Start/End: Original strand, 15512228 - 15512389
Alignment:
Q  107 ttgccatgaagcctacattagttactaccctttgtttcctcctcttttccttcaccatctactttccattagcctttacacatgcaaataaaattatcgt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |  |||||||    
T  15512228 ttgccatgaagcctacattagttactaccctttgtttcctcctcttttccttcaccatctactttccattaccgtttacacatgcaaatgattttatcgt 15512327  T
Q  207 caaagatatatttgggaaccccgttgttcctagtggcagctactatatttggcctgattact 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15512328 caaagatatatttgggaaccccgttgttcctagtggcagctactatatttggcctgattact 15512389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 107 - 268
Target Start/End: Complemental strand, 16328387 - 16328229
Alignment:
Q  107 ttgccatgaagcctacattagttactaccctttgtttcctcctcttttccttcaccatctactttccattagcctttacacatgcaaataaaattatcgt 206  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||   |   ||||||||    
T  16328387 ttgccatgaagcctacattagttaccaccctttgcttcctcctcttttccttcaccacctactttccattaccctttacacatgc---tggtattatcgt 16328291  T
Q  207 caaagatatatttgggaaccccgttgttcctagtggcagctactatatttggcctgattact 268  Q
    ||||||||||| |||||| || |||||||||||||| ||||||| |||||||||||||||||    
T  16328290 caaagatatatatgggaaacctgttgttcctagtggaagctactttatttggcctgattact 16328229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 16351833 - 16351757
Alignment:
Q  107 ttgccatgaagcctacattagttactaccctttgtttcctcctcttttccttcaccatctactttccattagccttt 183  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  16351833 ttgccatgaatcttacattagttaccaccctttgtttcctcctcttttccttcaccacctactttccattacccttt 16351757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 15504942 - 15504987
Alignment:
Q  11 atgaatgatttgttagaacaagtctataaataaaggtttcaatggt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15504942 atgaatgatttgttagaacaagtctataaataaaggtttcaatggt 15504987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 15985495 - 15985450
Alignment:
Q  11 atgaatgatttgttagaacaagtctataaataaaggtttcaatggt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15985495 atgaatgatttgttagaacaagtctataaataaaggtttcaatggt 15985450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 16351716 - 16351653
Alignment:
Q  200 ttatcgtcaaagatatatttgggaaccccgttgttcctagtggcagctactatatttggcctga 263  Q
    |||||||||| ||||||  ||||||||||||||||||||||||||| |||| ||||||||||||    
T  16351716 ttatcgtcaaggatatacatgggaaccccgttgttcctagtggcagatactttatttggcctga 16351653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 16367835 - 16367792
Alignment:
Q  11 atgaatgatttgttagaacaagtctataaataaaggtttcaatg 54  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||    
T  16367835 atgaatggttttttagaacaagtctataaataaaggtttcaatg 16367792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 16351916 - 16351883
Alignment:
Q  23 ttagaacaagtctataaataaaggtttcaatggt 56  Q
    ||||||||||||||||||||||||||||||||||    
T  16351916 ttagaacaagtctataaataaaggtttcaatggt 16351883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 16367776 - 16367735
Alignment:
Q  107 ttgccatgaagcctacattagttactaccctttgtttcctcc 148  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  16367776 ttgccacgaagcctacattagttactaccgtttgtttcctcc 16367735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 54
Target Start/End: Complemental strand, 16328458 - 16328427
Alignment:
Q  23 ttagaacaagtctataaataaaggtttcaatg 54  Q
    ||||||||||||||||||||||||||||||||    
T  16328458 ttagaacaagtctataaataaaggtttcaatg 16328427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 16332616 - 16332571
Alignment:
Q  11 atgaatgatttgttagaacaagtc--tataaataaaggtttcaatg 54  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||    
T  16332616 atgaatgatttcttagaacaagtctatataaataaaggtttcaatg 16332571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 16373537 - 16373495
Alignment:
Q  116 agcctacattagttactaccctttgtttcctcctcttttcctt 158  Q
    |||| |||||||||||||| ||||||||||| |||||||||||    
T  16373537 agccgacattagttactactctttgtttcctactcttttcctt 16373495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 16332513 - 16332476
Alignment:
Q  121 acattagttactaccctttgtttcctcctcttttcctt 158  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  16332513 acattagttactactctttgtttcctactcttttcctt 16332476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 16364733 - 16364692
Alignment:
Q  116 agcctacattagttactaccctttgtttcctcctcttttcct 157  Q
    |||| |||||||||||||| ||||||||||| ||||||||||    
T  16364733 agccgacattagttactactctttgtttcctactcttttcct 16364692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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