View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10806_high_5 (Length: 250)
Name: NF10806_high_5
Description: NF10806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10806_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 56319131 - 56318891
Alignment:
| Q |
1 |
tatatgcggctagcgttcgttctactgtttatacttttaannnnnnnnattcaaaccaaatgacctaatcttagtatataatagtccacaaatgagacga |
100 |
Q |
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| T |
56319131 |
tatatgcggctagcgttcgttctactgtttatacttttaattttttttattcaaaccaaatgacctaatattagtatataatagtccacaaatcagacga |
56319032 |
T |
|
| Q |
101 |
tgtgatcatcgag-ttctaattccagtgaatttctaatgattattgtcattttatctatctacaacaaaaagaga--gactaaattcaaattttgctggg |
197 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| |||| |
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| T |
56319031 |
tgtgatcatcgaggttctaattcctgtgaatttctaatgattattgtcattttatctatctacaacaaaaaaaaaaagactaaattcaaattttgttggg |
56318932 |
T |
|
| Q |
198 |
attaaatgtcacgaataatagactattactttttccaccct |
238 |
Q |
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| T |
56318931 |
attaaatgtcacgaataatagactattacttttcccaccct |
56318891 |
T |
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