View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10806_high_8 (Length: 241)
Name: NF10806_high_8
Description: NF10806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10806_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10069035 - 10068811
Alignment:
| Q |
1 |
tctcaagttgattatcaagccacgacaaactagtgtgagaaaattcttgtggataaaactttgcaaattcaatcaatttttccttgtcaaaagaagagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10069035 |
tctcaagttgattatcaagccacgacaaactagtgtgagaaaattgtcgtggataaaactttgcaaattcaatcaatttttccttgtcaaaagaagtgaa |
10068936 |
T |
|
| Q |
101 |
caagtttcttggactcaaaaaagtcatgcaaatgagcaaccgagtatccgtctcagtaaaacgattgtttagctcctaaagttgcatgtccaaaatagta |
200 |
Q |
| |
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| T |
10068935 |
cgagtttctttcgctcaaacaatccatacaaatgagcaactgaatattcatctcagtaaaacggttgtttaactcttgaagttgcatgtccaaaatagaa |
10068836 |
T |
|
| Q |
201 |
taaaataatttaatgcgataatggt |
225 |
Q |
| |
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|||||||||| |||| ||||||||| |
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|
| T |
10068835 |
taaaataattcaatgtgataatggt |
10068811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 27927714 - 27927554
Alignment:
| Q |
1 |
tctcaagttgattatcaagccacgacaaactagtgtgagaaaattcttgtggataaaactttgcaaattcaatcaatttttccttgtcaaaagaagagaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27927714 |
tctcaagttgattatcaagccacgacaaactagtgtgagaaa-ttcttgcggataaaactttgcaaattcaatcaatttttccttgtcaaaagaagaaaa |
27927616 |
T |
|
| Q |
101 |
caagtttcttggactcaaaaaagtcatgcaaatgagcaaccgagtatccgtctcagtaaaac |
162 |
Q |
| |
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|||||||||| |||||||| ||| ||| |||||||||||| |||||| |||||| ||||||| |
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| T |
27927615 |
caagtttcttagactcaaacaagccatacaaatgagcaactgagtattcgtctccgtaaaac |
27927554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 217
Target Start/End: Complemental strand, 4815949 - 4815769
Alignment:
| Q |
37 |
gagaaaattcttgtggataaaactttgcaaattcaatcaatttttccttgtcaaaagaagagaacaagtttcttggactcaaaaaagtcatgcaaatgag |
136 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| ||| | |||||||| ||||||| |||| |||| | |||| | ||| |||||||| |
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| T |
4815949 |
gagaaaattcaattggataaaactttgcaaattcaatcaactttgctttgtcaaatttagagaacgagttgtttgggcacaaacactccatacaaatgag |
4815850 |
T |
|
| Q |
137 |
caaccgagtatccgtctcagtaaaacgattgtttagctcctaaagttgcatgtccaaaatagtataaaataatttaatgcg |
217 |
Q |
| |
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||||||| ||| |||||| |||||||||| || || || |||||||||||||| || ||||||||||||| |||||| |
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| T |
4815849 |
caaccgactatttgtctcattaaaacgattattaagttctccaagttgcatgtccacaaccgtataaaataattcaatgcg |
4815769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 216
Target Start/End: Complemental strand, 23600171 - 23600005
Alignment:
| Q |
50 |
tggataaaactttgcaaattcaatcaatttttccttgtcaaaagaagagaacaagtttcttggactcaaaaaagtcatgcaaatgagcaaccgagtatcc |
149 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||||||||||| | |||||||||| |||||| |||| | ||||||||| ||||| | | ||| |
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| T |
23600171 |
tggataaaacttggcaaattcaatcaactttgccttgtcaaaattaaagaacaagttggttggacacaaatactccatgcaaataagcaatcaactattt |
23600072 |
T |
|
| Q |
150 |
gtctcagtaaaacgattgtttagctcctaaagttgcatgtccaaaatagtataaaataatttaatgc |
216 |
Q |
| |
|
|||||| |||||||||| || || || | ||| || || |||| || | |||||||||||| ||||| |
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|
| T |
23600071 |
gtctcattaaaacgattattaagttcttgaagctggatatccataacaatataaaataattcaatgc |
23600005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 22581447 - 22581393
Alignment:
| Q |
37 |
gagaaaattcttgtggataaaactttgcaaattcaatcaatttttccttgtcaaa |
91 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||| | |||||||| |
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|
| T |
22581447 |
gagaaaattcaattggataaaactttgcaaattcaatcaactttgctttgtcaaa |
22581393 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 23086442 - 23086295
Alignment:
| Q |
53 |
ataaaactttgcaaattcaatcaatttttccttgtcaaaagaagagaacaagtttcttggactcaaaaaagtcatgcaaatgagcaaccgagtatccgtc |
152 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||||||| |||||||||||||| ||| ||| |||||| ||| ||| ||||||||||||| | ||| ||| |
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| T |
23086442 |
ataaaactttgcaaattctaccaattttaccttgtcgaaagaagagaacaaatttgttgaactcaatcaagccatacaaatgagcaaccaaccatctgtc |
23086343 |
T |
|
| Q |
153 |
tcagtaaaacgattgtttagctcctaaagttgcatgtccaaaatagta |
200 |
Q |
| |
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||| ||||||||||||| || ||| || ||||||||||||||||||| |
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| T |
23086342 |
tcattaaaacgattgttaagaacctgaaattgcatgtccaaaatagta |
23086295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 41500407 - 41500593
Alignment:
| Q |
37 |
gagaaaattcttgtggataaaactttgcaaattcaatcaatttttccttgtcaaaagaagagaacaagtttcttggactcaaaaaagtcatgcaaatgag |
136 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||| | |||||||| ||||||| |||| |||| | || | ||| |||||||| |
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| T |
41500407 |
gagaaaattcaattggataaaactttgcaaattcaatcaactttgctttgtcaaatttagagaacgagttgtttgggcacatactctccatacaaatgag |
41500506 |
T |
|
| Q |
137 |
caaccgagtatccgtctcagtaaaacgattgtttagctcctaaagttgcatgtccaaaatagtataaaataatttaatgcgataatg |
223 |
Q |
| |
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||||||| ||| |||||| ||||||||| || || || | |||||||||||||| || ||||||||||||| |||||| ||||| |
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| T |
41500507 |
caaccgactatttgtctcattaaaacgatcattaagttcttgaagttgcatgtccacaaccgtataaaataattcaatgcggtaatg |
41500593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 29638564 - 29638378
Alignment:
| Q |
37 |
gagaaaattcttgtggataaaactttgcaaattcaatcaatttttccttgtcaaaagaagagaacaagtttcttggactcaaaaaagtcatgcaaatgag |
136 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||| | |||||||| ||||||| |||| |||| | |||| | ||| |||||||| |
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| T |
29638564 |
gagaaaattcaattggataaaactttgcaaattcaatcaactttgctttgtcaaatttagagaacgagttgtttgggcacaaacactccatacaaatgag |
29638465 |
T |
|
| Q |
137 |
caaccgagtatccgtctcagtaaaacgattgtttagctcctaaagttgcatgtccaaaatagtataaaataatttaatgcgataatg |
223 |
Q |
| |
|
||||||| ||| |||||| |||||||||| || || || | |||||||||||||| || ||||||||||||| |||||| ||||| |
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|
| T |
29638464 |
caaccgactatttgtctcattaaaacgattattaagttcttgaagttgcatgtccacaaccgtataaaataattcaatgcggtaatg |
29638378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 10353686 - 10353500
Alignment:
| Q |
37 |
gagaaaattcttgtggataaaactttgcaaattcaatcaatttttccttgtcaaaagaagagaacaagtttcttggactcaaaaaagtcatgcaaatgag |
136 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||| |||| || ||| ||||||| ||||||| || ||||||||||| ||| ||| |||| || |
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|
| T |
10353686 |
gagaaaattcatgaggataaaaatttgcaaattccatcacccttgtcttatcaaaagtagagaacttattagttggactcaaacaagccatacaaagaag |
10353587 |
T |
|
| Q |
137 |
caaccgagtatccgtctcagtaaaacgattgtttagctcctaaagttgcatgtccaaaatagtataaaataatttaatgcgataatg |
223 |
Q |
| |
|
||||||||||| ||| |||| ||||||| || || |||| |||||||||||||| ||||||||||||||||| || |||||||| |
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|
| T |
10353586 |
caaccgagtatttgtcacagtgaaacgatcattaagttcctgaagttgcatgtccacaatagtataaaataattcaacacgataatg |
10353500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 675994 - 676180
Alignment:
| Q |
37 |
gagaaaattcttgtggataaaactttgcaaattcaatcaatttttccttgtcaaaagaagagaacaagtttcttggactcaaaaaagtcatgcaaatgag |
136 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||| | |||||||| ||||||| |||| |||| | |||| | ||| |||||||| |
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|
| T |
675994 |
gagaaaattcaattggataaaactttgcaaattcaatcaactttgctttgtcaaatttagagaacgagttgtttgggcacaaacactccatacaaatgag |
676093 |
T |
|
| Q |
137 |
caaccgagtatccgtctcagtaaaacgattgtttagctcctaaagttgcatgtccaaaatagtataaaataatttaatgcgataatg |
223 |
Q |
| |
|
||||||| ||| |||||| |||||||||| || || || |||||||||||||| || ||||||||||||| |||||| ||||| |
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|
| T |
676094 |
caaccgactatttgtctcattaaaacgattattaagttctcgaagttgcatgtccacaaccgtataaaataattcaatgcggtaatg |
676180 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 19238862 - 19238690
Alignment:
| Q |
52 |
gataaaactttgcaaattcaatcaatttttccttgtcaaaagaagagaacaagtttcttggactcaaaaaagtcatgcaaatgagcaaccgagtatccgt |
151 |
Q |
| |
|
|||||| |||| ||||||||| ||||||| |||||||||| ||| |||||| ||| ||||||| ||| || ||| | ||||| |||| || ||| || |
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|
| T |
19238862 |
gataaatctttacaaattcaaccaattttgccttgtcaaat-aagggaacaaatttgttggactaaaacaaaccatacgaatgaccaactgactatttgt |
19238764 |
T |
|
| Q |
152 |
ctcagtaaaacgattgtttagctcctaaagttgcatgtccaaaatagtataaaataatttaatgcgataatggt |
225 |
Q |
| |
|
|||| ||||| ||||| ||||| | |||||||||||| |||| | ||||||||| || |||||||||||||| |
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|
| T |
19238763 |
ctcattaaaattgttgttaagctcttgaagttgcatgtctaaaacaatataaaatatttcaatgcgataatggt |
19238690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 216
Target Start/End: Original strand, 30866437 - 30866603
Alignment:
| Q |
50 |
tggataaaactttgcaaattcaatcaatttttccttgtcaaaagaagagaacaagtttcttggactcaaaaaagtcatgcaaatgagcaaccgagtatcc |
149 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| ||||||||||| |||||||||||| |||| | |||| | ||||||||| || || ||| ||| |
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|
| T |
30866437 |
tggataaaacttggcaaattcaatcaactttgccttgtcaaaattagagaacaagttggttgggcacaaacactccatgcaaataagaaatcgactattt |
30866536 |
T |
|
| Q |
150 |
gtctcagtaaaacgattgtttagctcctaaagttgcatgtccaaaatagtataaaataatttaatgc |
216 |
Q |
| |
|
||||| |||||||||| || || || | ||| ||||||| || | |||||||||||||| ||||| |
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|
| T |
30866537 |
ttctcaataaaacgattattaagttcttgaagctgcatgttcatagcagtataaaataattcaatgc |
30866603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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