View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10806_low_16 (Length: 218)

Name: NF10806_low_16
Description: NF10806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10806_low_16
NF10806_low_16
[»] chr3 (1 HSPs)
chr3 (32-131)||(35341640-35341739)
[»] chr4 (2 HSPs)
chr4 (32-131)||(44184945-44185044)
chr4 (32-131)||(10420775-10420874)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 35341640 - 35341739
Alignment:
Q  32 aacagtaaaagttgtgcggtgtttgatccaaaagataacaatggaatataacaaaaacagtagtggagcactggacaagtctctcgaaatttgtatcccg 131  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  35341640 aacaataaaagttgtgcggtgtttgatccaaaagataacaatggaacagaacaaaaacagtagcggagcactggacaagtctcccgaaatttgtaacccg 35341739  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 44185044 - 44184945
Alignment:
Q  32 aacagtaaaagttgtgcggtgtttgatccaaaagataacaatggaatataacaaaaacagtagtggagcactggacaagtctctcgaaatttgtatcccg 131  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||   |||||||||| ||||    
T  44185044 aacaataaaagttgtgcggtgtttgatccaaaagataacaatggaatagaacaaaaacaatagcggagcactggacaagtctactgaaatttgtaacccg 44184945  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 10420874 - 10420775
Alignment:
Q  32 aacagtaaaagttgtgcggtgtttgatccaaaagataacaatggaatataacaaaaacagtagtggagcactggacaagtctctcgaaatttgtatcccg 131  Q
    |||| ||||| |||||| |||||||||||||||||||||||||||| | |||||||||||||  ||||||| ||||||||||| ||||||||||| ||||    
T  10420874 aacaataaaaattgtgcagtgtttgatccaaaagataacaatggaacagaacaaaaacagtaccggagcaccggacaagtctcccgaaatttgtaacccg 10420775  T

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