View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10806_low_2 (Length: 308)

Name: NF10806_low_2
Description: NF10806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10806_low_2
NF10806_low_2
[»] chr5 (3 HSPs)
chr5 (4-308)||(31071776-31072080)
chr5 (4-308)||(31052944-31053248)
chr5 (4-308)||(31039454-31039758)
[»] chr4 (1 HSPs)
chr4 (20-52)||(8979403-8979435)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 4 - 308
Target Start/End: Original strand, 31071776 - 31072080
Alignment:
Q  4 aaatctatatcactacctatgaatctctctggataaaattcttctggatccttccatgcttccggatctctatggattgcccacgcgttaatgtacacca 103  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31071776 aaatctatatcactacctatgaatctctctggataaaactcttctggatccttccatgcttccggatctctatggattgcccacgcgttaatgtacacca 31071875  T
Q  104 atgtcttgtctggaatttcgtacccttcgatgtcgcactttttcatcgtttctcttggtaaaagtacgggtaatgacgggtacagtctcattgattcttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31071876 atgtcttgtctggaatttcgtacccttcgatgtcgcactttttcatcgtttctcttggtaaaagtacgggtaatgacgggtacagtctcattgattcttt 31071975  T
Q  204 tataactgccttgaaatacggaagcttttcgacatcttcttcctctataaaacccttcccttcatatgcttttcgaatctcttcttgtactttctgcatc 303  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  31071976 tataactgccttgaaatatggaagcttttggacatcttcttcctctataaaacctttcccttcatatgctttccgaatctcttcttgtactttctgcatc 31072075  T
Q  304 actct 308  Q
    |||||    
T  31072076 actct 31072080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 308
Target Start/End: Original strand, 31052944 - 31053248
Alignment:
Q  4 aaatctatatcactacctatgaatctctctggataaaattcttctggatccttccatgcttccggatctctatggattgcccacgcgttaatgtacacca 103  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| || ||||||||||| ||| | || || | ||||||||    
T  31052944 aaatctatatcacttcctatgaatctctctggataaaactcttctggatccttccatacttctgggtctctatggatcgccaatgcattcacgtacacca 31053043  T
Q  104 atgtcttgtctggaatttcgtacccttcgatgtcgcactttttcatcgtttctcttggtaaaagtacgggtaatgacgggtacagtctcattgattcttt 203  Q
    |||||||||||||||| ||||||||| | |||| ||| ||| |||| |||||||||||||||||||  || ||    ||||||| |||||||||||||||    
T  31053044 atgtcttgtctggaatgtcgtaccctgcaatgttgcaatttgtcattgtttctcttggtaaaagtataggcaaaattgggtacaatctcattgattcttt 31053143  T
Q  204 tataactgccttgaaatacggaagcttttcgacatcttcttcctctataaaacccttcccttcatatgcttttcgaatctcttcttgtactttctgcatc 303  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || |  |||| |||||||||||||||||||||||||||    
T  31053144 tataacggccttgaaatatggaagcttttcgacatcttcttcctctataaaacctttccctgcacacactttccgaatctcttcttgtactttctgcatc 31053243  T
Q  304 actct 308  Q
     ||||    
T  31053244 gctct 31053248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 4 - 308
Target Start/End: Original strand, 31039454 - 31039758
Alignment:
Q  4 aaatctatatcactacctatgaatctctctggataaaattcttctggatccttccatgcttccggatctctatggattgcccacgcgttaatgtacacca 103  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| || ||||||||||| ||| | || || | ||||||||    
T  31039454 aaatctatatcacttcctatgaatctctctggataaaactcttctggatccttccatacttctgggtctctatggatcgccaatgcattcacgtacacca 31039553  T
Q  104 atgtcttgtctggaatttcgtacccttcgatgtcgcactttttcatcgtttctcttggtaaaagtacgggtaatgacgggtacagtctcattgattcttt 203  Q
    |||||||||||||||| ||||||||| | |||| ||| ||| |||| |||||||||||||||||||  || ||    ||||||| |||||| ||||||||    
T  31039554 atgtcttgtctggaatgtcgtaccctgcaatgttgcaatttgtcattgtttctcttggtaaaagtataggcaaaattgggtacaatctcatcgattcttt 31039653  T
Q  204 tataactgccttgaaatacggaagcttttcgacatcttcttcctctataaaacccttcccttcatatgcttttcgaatctcttcttgtactttctgcatc 303  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || |  |||| |||||||||||||||||||||||||||    
T  31039654 tataacggccttgaaatatggaagcttttcgacatcttcttcctctataaaacctttccctgcacacactttccgaatctcttcttgtactttctgcatc 31039753  T
Q  304 actct 308  Q
     ||||    
T  31039754 gctct 31039758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 8979435 - 8979403
Alignment:
Q  20 ctatgaatctctctggataaaattcttctggat 52  Q
    ||||||||||||| |||||||||||||||||||    
T  8979435 ctatgaatctctcgggataaaattcttctggat 8979403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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