View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10806_low_9 (Length: 242)
Name: NF10806_low_9
Description: NF10806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10806_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 56320084 - 56319862
Alignment:
| Q |
20 |
aatggatcactagaaccttgattcactacaagttaaaacacacctgtccctgataaatatgttcatgttatgtatcttagaacaaacaaatcccatattg |
119 |
Q |
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| T |
56320084 |
aatggatcactagaaccttgattcactacaagttaaaacacacctgtccctgataaatatgttcatgttatgtatcttataacaaacaaatcccatattg |
56319985 |
T |
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| Q |
120 |
tagcgttttctttcaaatcaacaatctaaatcaaagcaacgccgtaccactttgtggtgttagaaaagttcatgctaactagtcgagatagcaggatcta |
219 |
Q |
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| T |
56319984 |
tagcgttttctttcaaatcaacaatctaaatcaaagcagcgccgtaccactttgtggtgttagaaaagttcatgctaactagtcgagatagcaggatcta |
56319885 |
T |
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| Q |
220 |
atttgcatgtaactttctgtgct |
242 |
Q |
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| T |
56319884 |
atttgcatgtaacattctgtgct |
56319862 |
T |
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