View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10807_2 (Length: 342)
Name: NF10807_2
Description: NF10807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10807_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 29 - 335
Target Start/End: Complemental strand, 6969337 - 6969032
Alignment:
| Q |
29 |
caacctactttgttataaggcctgaagtacattgtttagtttgtaattcagcataatcaccaacaatgtttcaaccttagcatattaatctaacttataa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969337 |
caacctactttgttataaggcctgaagtacattgtttagtttgtaattcagcataatcaccaacaatgtttcaaccttagcatattaatctaacttataa |
6969238 |
T |
|
| Q |
129 |
taaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaatataaaataactagcaatattgcctaggaa |
228 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969237 |
taaagtaaattaagactcgaatgtaagcatagaaatagagattcatactaatgttttaataagactctaatataaaataactagcaatattgcctaggaa |
6969138 |
T |
|
| Q |
229 |
ttttcagccttctgcatcttctgcctccttctctgatgaaccctcttcacctgtcccttcttctctctcagccttcatctctgctcctcctcatggcttt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||||||| |
|
|
| T |
6969137 |
ttttcagccttctgcatcttctgcctccttctctgatgaaccctcttcacctgtcccttcttctttctcagccttcatctctgcttct-ttcttggcttt |
6969039 |
T |
|
| Q |
329 |
catctca |
335 |
Q |
| |
|
||||||| |
|
|
| T |
6969038 |
catctca |
6969032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 999959 - 1000088
Alignment:
| Q |
105 |
ttagcatattaatctaacttataataaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatg------ttttaataagactct-- |
196 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||| | | ||| ||||| |||||||||||| || |
|
|
| T |
999959 |
ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagatact-atactaatgttttaattttaataagaccctaa |
1000057 |
T |
|
| Q |
197 |
aatataaaataactagcaatattgcctagga |
227 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |
|
|
| T |
1000058 |
aatataaaataaccagcaatattgcctagga |
1000088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 2178513 - 2178425
Alignment:
| Q |
110 |
atattaatctaacttataataaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaat |
199 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||| | |||||||||||| |||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
2178513 |
atattaatctaact-ataataatctaaaataagaatgtaatgtaagcatggaaatagatattcatactaatgttttaatacgactctaat |
2178425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 1000130 - 1000206
Alignment:
| Q |
237 |
cttctgcatcttctgcctccttctctgatgaaccctcttcacctgtcccttcttctctctcagccttcatctctgct |
313 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||||||||| ||||| | |||| ||||| |||||||||||||| |
|
|
| T |
1000130 |
cttctgcatcttctgcctcctcctctagtgaatcctcttcactagtccccttttctttctcaaccttcatctctgct |
1000206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 208
Target Start/End: Original strand, 51315840 - 51315915
Alignment:
| Q |
133 |
gtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaatataaaataa |
208 |
Q |
| |
|
||||| |||||||||| ||||| ||| |||||||| ||||||| ||| ||||| ||||||||||||| ||||||| |
|
|
| T |
51315840 |
gtaaaataagactctattgtaaacatggaaatagatattcatattaacgttttcataagactctaatgcaaaataa |
51315915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 51315982 - 51316030
Alignment:
| Q |
244 |
atcttctgcctccttctctgatgaaccctcttcacctgtcccttcttct |
292 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
51315982 |
atcttctgcctccttctctgatgaatcctctccactagtcccttcttct |
51316030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University