View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10807_low_1 (Length: 456)
Name: NF10807_low_1
Description: NF10807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10807_low_1 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 23 - 446
Target Start/End: Original strand, 36357135 - 36357544
Alignment:
| Q |
23 |
ttgaatcatttcaacgagacaattttattgttatttaagatttgtgtcatttatatannnnnnnnctacttat----tgtgacatccaaaaatagaaaat |
118 |
Q |
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| T |
36357135 |
ttgaatcatttcaatgagacaattttattgttatttaagatttgtgtcatttatatattttttt-ctacttatatattgtgacatccaaaaaaagaaaat |
36357233 |
T |
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| Q |
119 |
tgtgacaccaatttaaattgacgaaggaaatgatggacaaatacaaagtttgagaattatgattatctcgagagagagttacattaattatgtgtgatgt |
218 |
Q |
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| T |
36357234 |
tgtgacaccaatttaaattgacgaaggaaatgatggacaaatacaaagtttgagaattatgattatctcgaga--gagttacattaattatgtgtgatgt |
36357331 |
T |
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| Q |
219 |
aataacatcaatcttataaatactaataatattatttcatggtaagactataaggtcattcattattttatatttcttacaatattaagtattgtgttag |
318 |
Q |
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| T |
36357332 |
aataacatcaatcttataaatactaataatattatttcatggtaagactataaggtcattcattattttatatttcttacaatattaagtattgtgttag |
36357431 |
T |
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| Q |
319 |
catgtatagatcataaatgtatttgcgtcaaatttttcatggaggttttccccacgcttgacttgtttcctcaattgtctttctcttttccaccacctcc |
418 |
Q |
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| T |
36357432 |
catgtata---------------tgcgtctaatttttcatggaggttttccccacgcttgacttgtttcctcaattgtctttctcttttccaccacctcc |
36357516 |
T |
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| Q |
419 |
catctttctaccaatgagaaaacctatg |
446 |
Q |
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| T |
36357517 |
catctttctaccaatgagaaaacctatg |
36357544 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 39659685 - 39659629
Alignment:
| Q |
22 |
gttgaatcatttcaacgagacaattttattgttatttaagatttgtgtcatttatat |
78 |
Q |
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| T |
39659685 |
gttgaatcatttcaacttgacaattttatttttgtttaggatttctgtcatttatat |
39659629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 2592 - 2536
Alignment:
| Q |
22 |
gttgaatcatttcaacgagacaattttattgttatttaagatttgtgtcatttatat |
78 |
Q |
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| T |
2592 |
gttgaattatttcaacgaggcaattttgttattatttaggatttcagtcatttatat |
2536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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