View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10809_2 (Length: 505)

Name: NF10809_2
Description: NF10809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10809_2
NF10809_2
[»] chr1 (7 HSPs)
chr1 (12-476)||(28662915-28663379)
chr1 (192-390)||(28654693-28654891)
chr1 (192-390)||(28635412-28635610)
chr1 (192-390)||(28605244-28605442)
chr1 (12-123)||(28604847-28604958)
chr1 (12-123)||(28635225-28635336)
chr1 (12-114)||(28654521-28654620)


Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 12 - 476
Target Start/End: Original strand, 28662915 - 28663379
Alignment:
Q  12 agagatcatcaagcaaaaagtcattgaactgtataacgagcatggaaacacagcggtttcgtgggttagaaatctcttccatgattgcatagtcgaggtg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28662915 agagatcatcaagcaaaaagtcattgaactgtataacgagcatggaaacacagcggtttcgtgggttagaaatctcttccatgattgcatagtcgaggtg 28663014  T
Q  112 agtataaatataatcgcaggaagttatcatttttggattaaagaagcagttaatataatgatatatatgtgggtttccacgcagtcatgcgatgcatccc 211  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28663015 agtataaatataatcgcagcaagttatcatttttggattaaagaagcaattaatataatgatatatatgtgggtttccacgcagtcatgtgatgcatccc 28663114  T
Q  212 tgcttttagaatcggtgggcgatgtagtatcggaacagacatcagagagaagttccgggatgcgaaacttcaagtatgtaaaaaccatcaaagctgctgt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28663115 tgcttttagaatcggtgggcgatgtagtatcggaacagacatcagagagaagttccgggatgcgaaacttcaagtatgtaaaaaccatcaaagctgctgt 28663214  T
Q  312 ggagaaagaatgtcccttgacagtatcatgtgccgacattgttgctctttccgctagagacggaattgccatggtatgttaagagtcgcacattagaaat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28663215 ggagaaagaatgtcccttgacagtatcatgtgccgacattgttgctctttccgctagagacggaattgccatggtatgttaagagtcgcacattagaaat 28663314  T
Q  412 cccagataaaaattgagacttaaaattaaaagatttttatgttggtgcatttgtatagttgggag 476  Q
    |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  28663315 cccacataaaaattgagacttaaaattaaaagatttttatgctgttgcatttgtatagttgggag 28663379  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 192 - 390
Target Start/End: Original strand, 28654693 - 28654891
Alignment:
Q  192 gcagtcatgcgatgcatccctgcttttagaatcggtgggcgatgtagtatcggaacagacatcagagagaagttccgggatgcgaaacttcaagtatgta 291  Q
    ||||||||||||||||||| | ||||||| | ||  | ||| ||| |||||||| |||||||| |  |||||||  |||||| |||| |||||||||||     
T  28654693 gcagtcatgcgatgcatcctttcttttagcaacgtggcgcggtgtggtatcggagcagacatcggtaagaagttttgggatgagaaatttcaagtatgtg 28654792  T
Q  292 aaaaccatcaaagctgctgtggagaaagaatgtcccttgacagtatcatgtgccgacattgttgctctttccgctagagacggaattgccatggtatgt 390  Q
    || ||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||| ||||| |||||||||    
T  28654793 aacaccatcaaagctgctgttgagaaagaatgtcccttgacagtgtcatgtgctgatattgttgctctttctgctagagacggtattgcaatggtatgt 28654891  T

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Target: chr1; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 192 - 390
Target Start/End: Original strand, 28635412 - 28635610
Alignment:
Q  192 gcagtcatgcgatgcatccctgcttttagaatcggtgggcgatgtagtatcggaacagacatcagagagaagttccgggatgcgaaacttcaagtatgta 291  Q
    ||||||||| ||||||||||||||||||| | |||||   | ||| |||||||| |||||||| | ||||||||  |||||| |||| |||||||||||     
T  28635412 gcagtcatgtgatgcatccctgcttttagcaacggtgcatggtgtggtatcggagcagacatcggtgagaagttttgggatgagaaatttcaagtatgtg 28635511  T
Q  292 aaaaccatcaaagctgctgtggagaaagaatgtcccttgacagtatcatgtgccgacattgttgctctttccgctagagacggaattgccatggtatgt 390  Q
    || ||||||||||| ||||| ||||||||||||||||||||||| ||||| || |||||||| ||||| || ||||||||||| ||||| |||||||||    
T  28635512 aataccatcaaagcagctgtcgagaaagaatgtcccttgacagtgtcatgcgctgacattgtcgctctatctgctagagacggtattgcaatggtatgt 28635610  T

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Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 192 - 390
Target Start/End: Original strand, 28605244 - 28605442
Alignment:
Q  192 gcagtcatgcgatgcatccctgcttttagaatcggtgggcgatgtagtatcggaacagacatcagagagaagttccgggatgcgaaacttcaagtatgta 291  Q
    ||||||||| ||||||||||||||||| ||  |||||  ||  || |||||||| |||||| | ||||||||||  |||||| ||||||||||||||||     
T  28605244 gcagtcatgtgatgcatccctgcttttggagacggtgcacggcgtggtatcggagcagacagcggagagaagttttgggatgagaaacttcaagtatgtg 28605343  T
Q  292 aaaaccatcaaagctgctgtggagaaagaatgtcccttgacagtatcatgtgccgacattgttgctctttccgctagagacggaattgccatggtatgt 390  Q
    |  ||||||||||||||| | || ||||||||||| |||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||| |||||||    
T  28605344 agcaccatcaaagctgctcttgaaaaagaatgtcctttgacagtgtcatgcgctgacattgttgctctttctgctagagacggtattgccagggtatgt 28605442  T

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Target: chr1; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 28604847 - 28604958
Alignment:
Q  12 agagatcatcaagcaaaaagtcattgaactgtataacgagcatggaaacacagcggtttcgtgggttagaaatctcttccatgattgcatagtcgaggtg 111  Q
    |||||||||||||||| |||||| |||| |||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  28604847 agagatcatcaagcaacaagtcaatgaattgtataacaagcatggaaacacagcaatttcgtgggttagaaatctcttccatgattgcatagtcaaggtg 28604946  T
Q  112 agtataaatata 123  Q
    ||||||||||||    
T  28604947 agtataaatata 28604958  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 28635225 - 28635336
Alignment:
Q  12 agagatcatcaagcaaaaagtcattgaactgtataacgagcatggaaacacagcggtttcgtgggttagaaatctcttccatgattgcatagtcgaggtg 111  Q
    |||||| ||||| ||| |||||| |||||| |||||| ||||||||||||||||  |||| |||||| ||||||||||||||||||||| |||| | |||    
T  28635225 agagataatcaaacaacaagtcactgaactatataaccagcatggaaacacagccatttcctgggttcgaaatctcttccatgattgcacagtcaacgtg 28635324  T
Q  112 agtataaatata 123  Q
    ||||||||||||    
T  28635325 agtataaatata 28635336  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 28654521 - 28654620
Alignment:
Q  12 agagatcatcaagcaaaaagtcattgaactgtataacgagcatggaaacacagcggtttcgtgggttagaaatctcttccatgattgcatagtcgaggtg 111  Q
    |||||| ||||||||  |||||| |||||| |||||    || |||| ||||||  |||||||| || |||||||||||||||||||||| ||| | |||    
T  28654521 agagataatcaagcagcaagtcactgaactatataat---caaggaagcacagccatttcgtggcttcgaaatctcttccatgattgcatggtcaatgtg 28654617  T

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