View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10809_3 (Length: 480)
Name: NF10809_3
Description: NF10809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10809_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 4e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 30476370 - 30476215
Alignment:
| Q |
29 |
aaattgaacctttttcacaaacacttcaccttcaacctcaaaactcaatagcccattacnnnnnnnaaacttttactacaattagtttttaaattacaca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30476370 |
aaattgaacctttttcacaaacacttcaccttcaacctcaaaactcaatagcccattactttttttaaacttttactacaattagtttttaaattacaca |
30476271 |
T |
|
| Q |
129 |
ccttttcagattgtgattggtaaattgaaatcattcattcatttacagtcatggat |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30476270 |
ccttttcagattgtgattggtaaattgaaatcattcattcatttacagtcatggat |
30476215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 273 - 456
Target Start/End: Complemental strand, 30476138 - 30475955
Alignment:
| Q |
273 |
atacgacacatgtacataacgtgcagatctgtgtaatccactgaattttcccacaaaagggaacaannnnnnnnnnnnnnnnnnnnnnnnattacaaaat |
372 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30476138 |
atacgacacatgtacataaagtgcagatctgtgtaatccactgaattttcccacaaaagggaacaatttttcttcgttttttgagtttttattacaaaat |
30476039 |
T |
|
| Q |
373 |
gaaagaggaaaagaaaaagttgaagggtgaatctgtgagacccagaaagcaagttagaggcttttggatgaaaggttgatgatg |
456 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30476038 |
gaaagaggaaaagaaaaagttggagggtgaatctgtgagacccagaaagcaagttagaggcttttggatgaaaggttgatgatg |
30475955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 10148133 - 10148191
Alignment:
| Q |
122 |
ttacacaccttttcagattgtgattggtaaattgaaatcattcattcatttacagtcat |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
10148133 |
ttacacaccttttcagattgtgattggtaaaatgaagtcattcattcatttatagtcat |
10148191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 32159115 - 32159172
Alignment:
| Q |
95 |
aaacttttactacaattagtttttaaattacacaccttttcagattgtgattggtaaa |
152 |
Q |
| |
|
||||||||| |||||| || || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
32159115 |
aaacttttattacaatcagagattgaattacacaccctttcagattgtgattggtaaa |
32159172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University