View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10809_7 (Length: 359)
Name: NF10809_7
Description: NF10809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10809_7 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 28290722 - 28290371
Alignment:
| Q |
1 |
gtgcctgttcagagaaaatcaaattaacacaattcaatataaaaggaaaactgatcggtgaaaatcaaataaacacaattcaatataaaaggaaaatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28290722 |
gtgcctgttcagagaaaatcaaattaacacaattcaatataaaaggaaaactgatcggtgaaaatcaaataaacacaattcaatataaaaggaaaatgaa |
28290623 |
T |
|
| Q |
101 |
cttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagcttttagaatgtgatgcttggtttgatcaattgagctgcatataag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28290622 |
cttacttgcagccaaagaaacctcttttcacagtcaacacggagggatgttcagcttttagaatgtgatgcttggtttgatcaattaagctgcatataag |
28290523 |
T |
|
| Q |
201 |
acataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaattacgccaaatttataaatcaactaatggcagtaccgaatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28290522 |
acataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaattacgccaaatttataaatcaactaatggcagtaccgaatttt |
28290423 |
T |
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| Q |
301 |
ctcctgagcagactctccccacatcagaaacacgaccccttccttcatctca |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28290422 |
ctcctgagcagactctccccacatcagaaacacgaccccttccttcttctca |
28290371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 99 - 351
Target Start/End: Complemental strand, 28282348 - 28282097
Alignment:
| Q |
99 |
aacttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagcttttagaatgtgatgcttggtttgatcaattgagctgcatata |
198 |
Q |
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||||||||||||||| |||||||||| ||||||||| | || |||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
28282348 |
aacttacttgcagccgaagaaacctcctttcacagtagctccagaaggatgttcagctttcagaatatgatgcttggtttgatcaattaagctgaatata |
28282249 |
T |
|
| Q |
199 |
agacataccaaaagtaagcagaataacttgcttgtcacccattccgctaaaataaacaattacgccaaatttata-aatcaactaatggcagtaccgaat |
297 |
Q |
| |
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||||| || ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28282248 |
agaca--cccaaagtgagaagaataacttgcttgtcgcccattccgctaaaataaacaattacgccaaatttatagaatcaactaatggcagtaccgaat |
28282151 |
T |
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| Q |
298 |
tttctcctgagcagactctccccacatcagaaacacgaccccttccttcatctc |
351 |
Q |
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||||||||||||| |||||||||||| ||||||||| | ||||||||| |||| |
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| T |
28282150 |
tttctcctgagcatactctccccacagcagaaacacaagtccttccttcttctc |
28282097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 29558345 - 29558430
Alignment:
| Q |
101 |
cttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagcttttagaatgtgatgcttggtttgatcaatt |
186 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
29558345 |
cttacttgcagccgaagaaacctcttttcacagtcaacacggaaggatgctcagctttcagaatgtgatgcttggtttgatcaatt |
29558430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 19251244 - 19251144
Alignment:
| Q |
101 |
cttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagcttttagaatgtgatgcttggtttgatcaattgagctgcatataag |
200 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||||| |
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| T |
19251244 |
cttacttgcagccaaagaaaccttttttcacagtcaactcagagggatgtgcagcttttagaatgtgatgcttggttgcatcaattatgctgcacataag |
19251145 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
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| |
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|
| T |
19251144 |
a |
19251144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 28278594 - 28278529
Alignment:
| Q |
99 |
aacttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagcttttagaat |
164 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||| |||||||||| ||||||| ||||| |
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| T |
28278594 |
aacttacttgcagctaaagaaacctctttccacagtcaacctggagggatgtgcagctttcagaat |
28278529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 28303190 - 28303126
Alignment:
| Q |
282 |
aatggcagtaccgaattttctcctgagcagactctccccacatcagaaacacgaccccttccttc |
346 |
Q |
| |
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||||| |||||| || ||||||||||||||||| |||||||| ||||||||| || ||||||||| |
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| T |
28303190 |
aatggtagtacctaagtttctcctgagcagactttccccacagcagaaacacaactccttccttc |
28303126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 28303558 - 28303473
Alignment:
| Q |
101 |
cttacttgcagccaaagaaacctcttttcacagtcaacgcggagggatgttcagcttttagaatgtgatgcttggtttgatcaatt |
186 |
Q |
| |
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||||| |||| |||||||| ||||| ||| ||| ||| |||| |||||| ||||||||||||||||||| |||||| ||||||| |
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| T |
28303558 |
cttacctgcaaccaaagaagcctctattcgcagacaaaccggaaggatgtgcagcttttagaatgtgatgtttggttgcatcaatt |
28303473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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