View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1080_high_10 (Length: 253)
Name: NF1080_high_10
Description: NF1080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1080_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 34879681 - 34879544
Alignment:
| Q |
87 |
gttccacaagaaaaacaaaattgaggggaagctaagtacctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34879681 |
gttccacaagaaaaacaaaattgaggggaagctaagtacctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttc |
34879582 |
T |
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| Q |
187 |
atcatcctttaaaatacaaaacaaaatttccaatgcat |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
34879581 |
atcatcctttaaaatacaaaacaaaatttccaatgcat |
34879544 |
T |
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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 38371605 - 38371681
Alignment:
| Q |
120 |
aagtacctccaacagcagacacatcaacatttcctagaagctgttctttccatttcctcaagctttcatcatccttt |
196 |
Q |
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||||||||||||||||||| | ||||||| | || ||||| || ||||||||||| ||||| ||||||||||||||| |
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| T |
38371605 |
aagtacctccaacagcagatatatcaacactacccagaagttgctctttccattttctcaaactttcatcatccttt |
38371681 |
T |
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