View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1080_high_9 (Length: 260)

Name: NF1080_high_9
Description: NF1080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1080_high_9
NF1080_high_9
[»] chr3 (8 HSPs)
chr3 (30-260)||(40568552-40568782)
chr3 (30-248)||(40573165-40573383)
chr3 (30-256)||(40579614-40579840)
chr3 (30-260)||(40602108-40602338)
chr3 (55-260)||(40591458-40591663)
chr3 (30-206)||(40598114-40598290)
chr3 (178-260)||(40597940-40598022)
chr3 (115-223)||(40588102-40588207)
[»] chr2 (1 HSPs)
chr2 (30-260)||(2014954-2015184)
[»] chr4 (5 HSPs)
chr4 (55-224)||(13765431-13765601)
chr4 (55-194)||(14153219-14153358)
chr4 (91-136)||(14155316-14155361)
chr4 (59-102)||(14021501-14021544)
chr4 (157-195)||(14153369-14153407)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 40568782 - 40568552
Alignment:
Q  30 cttctctgttaactggcttgtgaggaagtattctgggtcaagataccctaatgtcccttgtactagagtggttatctgactatgatcaagaggaacaatc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40568782 cttctctgttaactggcttgtgaggaagtattctgggtcaagataccctaatgtcccttgtactagagtggttatctgactatgatcaagaggaacaatc 40568683  T
Q  130 cttgaagctccaaagtcagaaaccttcgcagtgagattgtgatctaggagtatatttgtagatttcacatctctatgtatgattggtgtagaagccgcag 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40568682 cttgaagctccaaagtcagaaaccttcgcagtgagattgtgatctaggagtatatttgtagatttcacatctctatgtatgattggtgttgaagccgcag 40568583  T
Q  230 agtgcaagtatgccaggactccagcagtttc 260  Q
    |||| ||||||||||||||||||||||||||    
T  40568582 agtgtaagtatgccaggactccagcagtttc 40568552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 40573383 - 40573165
Alignment:
Q  30 cttctctgttaactggcttgtgaggaagtattctgggtcaagataccctaatgtcccttgtactagagtggttatctgactatgatcaagaggaacaatc 129  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  40573383 cttctctgttaattggcttgtgtggaagtattctgggtcaagataccctaatgttccttgtactagagtgtttatttgactatgatcaagaggaacaatc 40573284  T
Q  130 cttgaagctccaaagtcagaaaccttcgcagtgagattgtgatctaggagtatatttgtagatttcacatctctatgtatgattggtgtagaagccgcag 229  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||    
T  40573283 cttgaagctccaaagtcagaaacctttgcagtgagattttgatctaggagtatatttgaagatttcacatctctatgtatgattggtgtcgaagcagcag 40573184  T
Q  230 agtgcaagtatgccaggac 248  Q
    |||| ||||||||||||||    
T  40573183 agtgtaagtatgccaggac 40573165  T

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Target: chr3; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 40579840 - 40579614
Alignment:
Q  30 cttctctgttaactggcttgtgaggaagtattctgggtcaagataccctaatgtcccttgtactagagtggttatctgactatgatcaagaggaacaatc 129  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  40579840 cttctctgttaattggcttgtgtggaagtattctgggtcaagataccctaatgttccttgtactagagtgtttatttgactatgatcaagaggaacaatc 40579741  T
Q  130 cttgaagctccaaagtcagaaaccttcgcagtgagattgtgatctaggagtatatttgtagatttcacatctctatgtatgattggtgtagaagccgcag 229  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  40579740 cttgaagctccaaagtcagaaacctttgcagtgagattttgatctaggagtatatttgaagatttcacatctctatgtatgattggtgtagaagcagcag 40579641  T
Q  230 agtgcaagtatgccaggactccagcag 256  Q
    |||| || |||||||| || |||||||    
T  40579640 agtgtaaatatgccagcacaccagcag 40579614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 40602338 - 40602108
Alignment:
Q  30 cttctctgttaactggcttgtgaggaagtattctgggtcaagataccctaatgtcccttgtactagagtggttatctgactatgatcaagaggaacaatc 129  Q
    |||||| ||||||  ||||||  ||||||||||||||||||||||||| |||||||| || || |||||| |||||||| | ||||||||||||||||||    
T  40602338 cttctcagttaacatgcttgtctggaagtattctgggtcaagataccccaatgtcccctgcacaagagtgtttatctgagtgtgatcaagaggaacaatc 40602239  T
Q  130 cttgaagctccaaagtcagaaaccttcgcagtgagattgtgatctaggagtatatttgtagatttcacatctctatgtatgattggtgtagaagccgcag 229  Q
     ||||||||||||| ||||||||||| ||| ||||||||  ||||||||| || ||||||||||| | ||||||||| |||||||| |||||||| ||||    
T  40602238 tttgaagctccaaaatcagaaacctttgcaatgagattgccatctaggaggatgtttgtagattttatatctctatgaatgattggagtagaagcagcag 40602139  T
Q  230 agtgcaagtatgccaggactccagcagtttc 260  Q
    | || |||||||||| |||||||||||||||    
T  40602138 aatgtaagtatgccaagactccagcagtttc 40602108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 55 - 260
Target Start/End: Complemental strand, 40591663 - 40591458
Alignment:
Q  55 aagtattctgggtcaagataccctaatgtcccttgtactagagtggttatctgactatgatcaagaggaacaatccttgaagctccaaagtcagaaacct 154  Q
    |||||||||||||| |||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||| |||| |||||||| ||||||||||    
T  40591663 aagtattctgggtcgagataccccaatgtcccttgcactagagtggttatcagactgtgatcaagaggaacaatctttgatgctccaaaatcagaaacct 40591564  T
Q  155 tcgcagtgagattgtgatctaggagtatatttgtagatttcacatctctatgtatgattggtgtagaagccgcagagtgcaagtatgccaggactccagc 254  Q
    | ||| ||||||||  ||| ||||| || ||||||||||| | ||||||||| |||||||| |||||||| ||||| || ||||||||||||||||||||    
T  40591563 ttgcaatgagattgacatcgaggaggatgtttgtagattttatatctctatgaatgattggagtagaagcagcagaatgtaagtatgccaggactccagc 40591464  T
Q  255 agtttc 260  Q
    ||||||    
T  40591463 agtttc 40591458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 40598290 - 40598114
Alignment:
Q  30 cttctctgttaactggcttgtgaggaagtattctgggtcaagataccctaatgtcccttgtactagagtggttatctgactatgatcaagaggaacaatc 129  Q
    |||||||||||||||||||||| ||||||| || |||||||||||||| | ||||||||| ||||| |||||||||||| | | |||||||||||| |||    
T  40598290 cttctctgttaactggcttgtgtggaagtactcagggtcaagatacccgagtgtcccttgcactagggtggttatctgagttttatcaagaggaacgatc 40598191  T
Q  130 cttgaagctccaaagtcagaaaccttcgcagtgagattgtgatctaggagtatatttgtagatttcacatctctatg 206  Q
     ||||||||||||||||||  ||||| ||||||||||| | |||||| ||||||||||||||||| | |||||||||    
T  40598190 tttgaagctccaaagtcagccacctttgcagtgagattttcatctagtagtatatttgtagatttgatatctctatg 40598114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 40598022 - 40597940
Alignment:
Q  178 agtatatttgtagatttcacatctctatgtatgattggtgtagaagccgcagagtgcaagtatgccaggactccagcagtttc 260  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||    
T  40598022 agtatatttgtagatttgacatctctatgtatgattggtgtggaagcagcagaatgtaagtatgccaggactccagcagtttc 40597940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 40588207 - 40588102
Alignment:
Q  115 tcaagaggaacaatccttgaagctccaaagtcagaaaccttcgcagtgagattgtgatctaggagtatatttgtagatttcacatctctatgtatgattg 214  Q
    ||||||||||||||||| ||||||| ||| ||  ||| ||| |||||||||||||||||    |||| ||||| || |||||||||||||||||||||||    
T  40588207 tcaagaggaacaatcctagaagctctaaaatcccaaaactttgcagtgagattgtgatc---aagtacatttgaagttttcacatctctatgtatgattg 40588111  T
Q  215 gtgtagaag 223  Q
    |||| ||||    
T  40588110 gtgttgaag 40588102  T

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Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 260
Target Start/End: Original strand, 2014954 - 2015184
Alignment:
Q  30 cttctctgttaactggcttgtgaggaagtattctgggtcaagataccctaatgtcccttgtactagagtggttatctgactatgatcaagaggaacaatc 129  Q
    ||||||||| || ||||||||| |||| ||||| |||||||| |||||  |||||||||||||||| ||  ||||||||||||| |||||||||||||||    
T  2014954 cttctctgtcaattggcttgtgtggaaatattccgggtcaaggtacccccatgtcccttgtactagggtttttatctgactatggtcaagaggaacaatc 2015053  T
Q  130 cttgaagctccaaagtcagaaaccttcgcagtgagattgtgatctaggagtatatttgtagatttcacatctctatgtatgattggtgtagaagccgcag 229  Q
    || ||||||||||||||||||||||| || ||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| || ||||    
T  2015054 ctagaagctccaaagtcagaaacctttgccgtgagattgcgatctaggagtatgtttgaagatttcacatctctatgtatgattggtgtagatgcagcag 2015153  T
Q  230 agtgcaagtatgccaggactccagcagtttc 260  Q
    | ||||||||||| |||||||||||||||||    
T  2015154 aatgcaagtatgctaggactccagcagtttc 2015184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 55 - 224
Target Start/End: Original strand, 13765431 - 13765601
Alignment:
Q  55 aagtattctgggtcaagataccctaatgtcccttgtactagagtggttatctgactatgatcaagaggaacaatccttgaagctccaaagtcagaaacct 154  Q
    |||||||| |||||||||||||| ||||||   || |||||||||||||||| ||||||||||||||||| |||  ||||| || | |||||| ||||||    
T  13765431 aagtattcagggtcaagataccccaatgtcatctgcactagagtggttatctaactatgatcaagaggaataattattgaatcttcgaagtcaaaaacct 13765530  T
Q  155 tc-gcagtgagattgtgatctaggagtatatttgtagatttcacatctctatgtatgattggtgtagaagc 224  Q
    |  | ||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  13765531 tttgtagtgagactgtgatctaggagtatatttgtagagttcacatctatatgtatgattggtgtagaagc 13765601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 14153219 - 14153358
Alignment:
Q  55 aagtattctgggtcaagataccctaatgtcccttgtactagagtggttatctgactatgatcaagaggaacaatccttgaagctccaaagtcagaaacct 154  Q
    ||||||||||  ||||||||||  |||||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||  |||| |    
T  14153219 aagtattctgcatcaagatacctcaatgtcccctgcagtagagtggttatctggctatgatcaagaggaacaatccttgaagctctaaagtcgaaaactt 14153318  T
Q  155 tcgcagtgagattgtgatctaggagtatatttgtagattt 194  Q
    | ||||||||||||||||||| ||||||||||||| ||||    
T  14153319 ttgcagtgagattgtgatctaagagtatatttgtatattt 14153358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 14155361 - 14155316
Alignment:
Q  91 actagagtggttatctgactatgatcaagaggaacaatccttgaag 136  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  14155361 actagagtggttttctgactatgatcaagaggaacaatccttgaag 14155316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 14021544 - 14021501
Alignment:
Q  59 attctgggtcaagataccctaatgtcccttgtactagagtggtt 102  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||    
T  14021544 attctaggtcaagatacccaaatgtcccttgcactagagtggtt 14021501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 14153369 - 14153407
Alignment:
Q  157 gcagtgagattgtgatctaggagtatatttgtagatttc 195  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  14153369 gcagtgagattgtgatctaagagtatatttgtatatttc 14153407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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