View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1080_low_14 (Length: 259)
Name: NF1080_low_14
Description: NF1080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1080_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 35850740 - 35850865
Alignment:
| Q |
1 |
cggtggcggcaattctaatgccacaggcaattcaaccggcgtctcagcatcagaacaggaatccctagaatcatcgtccatcacatcttgtgattcctct |
100 |
Q |
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| T |
35850740 |
cggtggcggcaattctaatgccacaggcaattcaaccggcgtctcagcatcagaacaggaatccctagaatcatcgtccatcacatcttgtgattcctct |
35850839 |
T |
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| Q |
101 |
tgatcttccacattcatctcactcga |
126 |
Q |
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|||||||||||||||| |||||||| |
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| T |
35850840 |
tgatcttccacattcaattcactcga |
35850865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 35841127 - 35841238
Alignment:
| Q |
5 |
ggcggcaattctaatgccacaggcaattcaaccggcgtctcagcatcagaacaggaatccctagaatcatcgtccatcacatcttgtgattcctcttgat |
104 |
Q |
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|||| ||||||| ||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||||| |||||| |||| |||||||||| |
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| T |
35841127 |
ggcgacaattctgatgccaccagcaattcaaccggtatctcagcatccgaacacaaatccctagaatcatcgtccataacatctcgtgaatcctcttgat |
35841226 |
T |
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| Q |
105 |
cttccacattca |
116 |
Q |
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||||| |||||| |
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| T |
35841227 |
cttccgcattca |
35841238 |
T |
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