View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1080_low_2 (Length: 395)
Name: NF1080_low_2
Description: NF1080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1080_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 145 - 374
Target Start/End: Original strand, 24142768 - 24142997
Alignment:
| Q |
145 |
tgtagaatcttaccacatgaagatggtattgggtgagcacaaacacgtcattcaggccaccatgatagtcatgaagctgttgaggctccacctccacctc |
244 |
Q |
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| T |
24142768 |
tgtagaatcttaccacatgaagatggtattgggtgagcacaaacacgtcatttaggccaccatgatagtcatgaagctgttgaggctccacctccacctc |
24142867 |
T |
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| Q |
245 |
gacctgcggctgctcatcaacatcatctgtgttctccacctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcaccttaggcgca |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24142868 |
gacctgcggctgctcatcaacatcatctgtgttctccacctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcaccttaggcgca |
24142967 |
T |
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| Q |
345 |
gggtcagcaaggcggccccttcccctgccc |
374 |
Q |
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| T |
24142968 |
gggtcagcaaggcggcccctgcccatgccc |
24142997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 24142670 - 24142735
Alignment:
| Q |
49 |
ttaatatcatgatacgattcactttagtttacacaaataaaaataaacatagccttcagattacat |
114 |
Q |
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| T |
24142670 |
ttaatatcatgatacgattcacgttagtttacacaaataaaaataaacatagccttcagcttacat |
24142735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 40974774 - 40974721
Alignment:
| Q |
283 |
cctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcacct |
336 |
Q |
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| T |
40974774 |
cctcctcctcctccatatggtacttctcgggctggggctcaggctcgttcacct |
40974721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 16362953 - 16362888
Alignment:
| Q |
49 |
ttaatatcatgatacgattcactttagtttacacaaataaaaataaacatagccttcagattacat |
114 |
Q |
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| T |
16362953 |
ttaatatcatgatatgattcaattcagtttacataaataaaaataatcatagcattcagtttacat |
16362888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 9030758 - 9030704
Alignment:
| Q |
60 |
atacgattcactttagtttacacaaataaaaataaacatagccttcagattacat |
114 |
Q |
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| T |
9030758 |
atacgattcaatccagtttacaaaaataaaaataaacatagccttcagcttacat |
9030704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 370
Target Start/End: Complemental strand, 1771586 - 1771499
Alignment:
| Q |
283 |
cctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcaccttaggcgcagggtcagcaaggcggccccttcccct |
370 |
Q |
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|||||||||||||||||| | | ||||||||| | ||||||||||| |||||||||| ||| |||| | ||||| |||||||||| |
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| T |
1771586 |
cctcctcctcctccatataatattgctcgggctggggctcaggctcgtacaccttaggctcagactcagaacggcggtcccttcccct |
1771499 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 1771830 - 1771775
Alignment:
| Q |
49 |
ttaatatcatgatacgattcactttagtttacacaaataaaaataaacatagcctt |
104 |
Q |
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|||||||||||| |||||||| |||||||||| | |||||| ||||||||||||| |
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| T |
1771830 |
ttaatatcatgacacgattcagtttagtttacttatataaaattaaacatagcctt |
1771775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 9030564 - 9030477
Alignment:
| Q |
157 |
ccacatgaagatggtattgggtgagcacaaacacgtcattcaggccaccatgatagtcatgaagctgttgaggctccacctccacctc |
244 |
Q |
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||||||||||||||||||||||||||||| ||| |||| |||| || |||| |||| ||| |||| ||||||||||||||||| |
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| T |
9030564 |
ccacatgaagatggtattgggtgagcacagacaagtcacgtgcgccatcaagatattcatttagcggttgtggctccacctccacctc |
9030477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 9030680 - 9030630
Alignment:
| Q |
64 |
gattcactttagtttacacaaataaaaataaacatagccttcagattacat |
114 |
Q |
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| T |
9030680 |
gattcaattcagtttacataaataaaaataaacataaccttcagtttacat |
9030630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 42229494 - 42229445
Alignment:
| Q |
50 |
taatatcatgatacgattcactttagtttacacaaataaaaataaacata |
99 |
Q |
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||||| |||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
42229494 |
taatagcatgatacgattcagttaagtttacataaataaaaataaacata |
42229445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 5979524 - 5979492
Alignment:
| Q |
74 |
agtttacacaaataaaaataaacatagccttca |
106 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
5979524 |
agtttacataaataaaaataaacatagccttca |
5979492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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