View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1080_low_4 (Length: 395)
Name: NF1080_low_4
Description: NF1080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1080_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 46762949 - 46763306
Alignment:
| Q |
10 |
aagaatatggttagaaagttttttaatttcaaaagcaaatgtgaagatattcaagcagatgctgttgtttatggaggttagtatctttgttttttcttca |
109 |
Q |
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| T |
46762949 |
aagaaaatggttagaaagttttttaatttcaaaagcaaatgtgaagatattcaagcagatgctgttgtttatggaggttagtatctttgttttttcttca |
46763048 |
T |
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| Q |
110 |
aaattcactttttaatagtgatcaatttcaacaatttattcttcaattattatctttgttgaataataagttagattgctacaatttcttggcatccaaa |
209 |
Q |
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| T |
46763049 |
aaattcactttttaatagtgatcaatttcaacaatttattcttcaattattatctttgttgaataataagttagattgctacaatttcttggcatccaaa |
46763148 |
T |
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| Q |
210 |
taaactcagttactgttttctttctttaggaggtgaggttgaatatggaagtaggaatagtttctctgagagagaaccatgcacaatcaaaaagagcaaa |
309 |
Q |
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| T |
46763149 |
taaactcagttactgttttccttctttaggaggtgaggttgaatatggaagtaggaatagcttctctgagagagaaccatgcacaatcaaaaagagcaaa |
46763248 |
T |
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| Q |
310 |
acaggtgaaccatttcttgaatcatgtccttttgaagttcttcttgatggtatcattt |
367 |
Q |
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| T |
46763249 |
acaggtgaaccatttcttgaatcatgtccttttgaagttcttcttgatggtatcattt |
46763306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 315
Target Start/End: Original strand, 1083582 - 1083640
Alignment:
| Q |
257 |
gaagtaggaatagtttctctgagagagaaccatgcacaatcaaaaagagcaaaacaggt |
315 |
Q |
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|||| |||| |||||| ||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
1083582 |
gaagcaggagtagtttgtctgagagagagccaagcacaatcaaaaagagcaaaacaggt |
1083640 |
T |
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