View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1080_low_6 (Length: 377)
Name: NF1080_low_6
Description: NF1080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1080_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 372
Target Start/End: Original strand, 42473299 - 42473640
Alignment:
| Q |
30 |
catttttctctatagttcttcatttcagagtttagattgataaacatatttggtggggtggatttttactctgttctgannnnnnnaatcttcctgctaa |
129 |
Q |
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| T |
42473299 |
catttttctctatagttcttcatttca-agtttagattgataaacatatttggtggggtggatttttactctgttctgatttttttaatcttcctgctaa |
42473397 |
T |
|
| Q |
130 |
ctatctcaattttacaactttaatcttgcacatgtatatctaatacttattttattaagtagaatcaaagacaatagaagagctgctgctgaggtaaaaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42473398 |
ctatctcaattttacaactttaatcttgcacatgtatatctaatacttattttattaagtagaatcaaagacaatagaagagctgctgctgaggtaaaaa |
42473497 |
T |
|
| Q |
230 |
gggacaatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttggggataatattcgtgcttcagc |
329 |
Q |
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| T |
42473498 |
gggacaatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttggggataatatccgtgcttcagc |
42473597 |
T |
|
| Q |
330 |
tgtttgcaagagatggtgttcagttgccacttctgtacgtgta |
372 |
Q |
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| T |
42473598 |
tgtttgcaagagatggtgttcagttgccacttctgtacgtgta |
42473640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 135 - 377
Target Start/End: Original strand, 42478946 - 42479182
Alignment:
| Q |
135 |
tcaattttacaactttaatcttgcacatgtatatctaatacttattttattaagtagaatcaaagacaatagaagagctgctgctgaggtaaaaagggac |
234 |
Q |
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| T |
42478946 |
tcaattttacaactttattcttgcacatgtatatctaatacttattttattaagtagaatcaaagacaatagaagagctgctg------taaaaagtgac |
42479039 |
T |
|
| Q |
235 |
aatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttggggataatattcgtgcttcagctgttt |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42479040 |
aatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatattggggataatattcgtgcttcagctgttt |
42479139 |
T |
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| Q |
335 |
gcaagagatggtgttcagttgccacttctgtacgtgtactcga |
377 |
Q |
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| T |
42479140 |
gcaagagatggtgttcagttgccacttctgtacgtgtactcga |
42479182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 44530274 - 44530222
Alignment:
| Q |
168 |
tctaatacttattttattaagtagaatcaaagacaatagaagagctgctgctg |
220 |
Q |
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| T |
44530274 |
tctaatacttatttttttaagtagaatcaaaggcaatagaagagctactgctg |
44530222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 42478842 - 42478888
Alignment:
| Q |
51 |
atttcagagtttagattgataaacatatttggtggggtggattttta |
97 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42478842 |
atttgagagtttagattgataaacatatttggtgggatggattttta |
42478888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 341
Target Start/End: Complemental strand, 26047439 - 26047333
Alignment:
| Q |
235 |
aatttggagctgcaaacatgggccgatctccctgctgaagtcttggaattgttcttgtctcgtttggatgttggggataatattcgtgcttcagctgttt |
334 |
Q |
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||||||||||||||||||||||| ||||||||||||||| | || ||| || || | |||||||| | | | ||||||| | |||||||| ||||||| |
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| T |
26047439 |
aatttggagctgcaaacatgggctgatctccctgctgaactattagaaatgatcatatctcgtttagccttagaggataatgtccgtgcttctgctgttt |
26047340 |
T |
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| Q |
335 |
gcaagag |
341 |
Q |
| |
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||||||| |
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| T |
26047339 |
gcaagag |
26047333 |
T |
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