View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1080_low_9 (Length: 324)
Name: NF1080_low_9
Description: NF1080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1080_low_9 |
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| [»] scaffold0223 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 182 - 321
Target Start/End: Original strand, 50872707 - 50872846
Alignment:
| Q |
182 |
atgtatagagagagtgaagaaagaaacttactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaac |
281 |
Q |
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| T |
50872707 |
atgtatagagagagtgaagaaagaaacttactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaac |
50872806 |
T |
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| Q |
282 |
gagggacttttgatcttatatactgcctctctgctcctcc |
321 |
Q |
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| T |
50872807 |
gagggacttttgatcttatatactgcctcactgctcctcc |
50872846 |
T |
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Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 50872542 - 50872640
Alignment:
| Q |
25 |
gaacctgaagatggctcttgacatgtgaaatagtgagtcctttgatatccatcaactgaagaacaagtttaggagtagcctctgccaaaaatacaaagt |
123 |
Q |
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| T |
50872542 |
gaacctgaagatggctcttgacatgtgaaatagtgagtcctttgatatccatcaactgaagaacaagtttaggagtagcctctgccaaaaatacaaagt |
50872640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 21138 - 21219
Alignment:
| Q |
26 |
aacctgaagatggctcttgacatgtgaaatagtgagtcctttgatatccatcaactgaagaacaagtttaggagtagcctct |
107 |
Q |
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| T |
21138 |
aacctgcaaatggctcttaacatgtgaaattgttagccctttaacatccatcaactgaagaacaagtttaggagtagcctct |
21219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 21326 - 21415
Alignment:
| Q |
210 |
tactatgatgacctccaagggtttgaatagcatgaacaaagcaacgatgaagttcaggagtccatctcaaacgagggacttttgatctta |
299 |
Q |
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| T |
21326 |
tactttgatgaccaccaagagtttcaatggcataaacaaagcaacgatgaagttcaggtgtccatcttaaacgaggaacctttgatctta |
21415 |
T |
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