View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10810_1 (Length: 734)
Name: NF10810_1
Description: NF10810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10810_1 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 261 - 685
Target Start/End: Original strand, 8280464 - 8280893
Alignment:
| Q |
261 |
aatgaagcttaagagtgaatagtgtattatgagtgtgtata---tgagcctcttaaaaatggtcaaatgtagacctttagttttagttattaattgtatt |
357 |
Q |
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| T |
8280464 |
aatgaagcttatgagtgaatagtgtattatgagtgtgtataatatcaacctcttaaaaatggtcaaatgtggacctttagttttagttattaattgtatt |
8280563 |
T |
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| Q |
358 |
gattgatgtgtataaattaatatattataattgtccattnnnnnnnttgagtatattataattgattgattgagttcgaatgtcgtatattattaaatag |
457 |
Q |
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| T |
8280564 |
gattgatatgtagaaattaatatattataattgtccattaaaaaaattgagtatattataattgattgattgagttcgaatgtcgtatattattaaatag |
8280663 |
T |
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| Q |
458 |
gatggatttgtaaaaataataaataaatattttgtgaaatttgattgagttcaggcttatcttactctaacctagcttgttttgatgatgttagtgctag |
557 |
Q |
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| T |
8280664 |
gatggatttgtaaaaataataaataaatattttgtgaaatttgattgaattcaagcttatcttgctctaacctagctgattttgatgatgttagtgctag |
8280763 |
T |
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| Q |
558 |
tttattttgatgatgtcttat--tgggttctcctggctcttgtcatttttgtcttagaatatgttaaagtgccttagtattgtatggctctagcatcatg |
655 |
Q |
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| T |
8280764 |
tttattttgatgatgttttattgtgagttctcctggctcttgtcatttttgtcttagaatatgttaaagtaccttagtattgtatggctctagcatcatg |
8280863 |
T |
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| Q |
656 |
ttattctatgtggttcaagcatactcattc |
685 |
Q |
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| T |
8280864 |
ttattctgtgtggttcaagcatactcattc |
8280893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 8280237 - 8280393
Alignment:
| Q |
28 |
gttctcacacggtcaaggagagcaagaactatgagcaagtacacaaagatagctattgtggtgttcaagctactattttcagctatttttggaaacccta |
127 |
Q |
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| T |
8280237 |
gttctcacacggtcaagaagaacaaggactatgagcaagtacacaaagatagctgttgtgattttcaagctactattttcagctatttttggaaacccta |
8280336 |
T |
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| Q |
128 |
tatctgctgtttttactcttgtggaagctcttgcttcaaattaatcgacaagcaacttctactacataa |
196 |
Q |
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| T |
8280337 |
tatctgctgttttta------------ctcttgcttcaaattaatcgacaagcaacttctactacataa |
8280393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 8262079 - 8261952
Alignment:
| Q |
41 |
caaggagagcaagaactatgagcaagtacacaaagatagctattgtggtgttcaagctactattttcagctatttttggaaaccctatatctgctgtttt |
140 |
Q |
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| T |
8262079 |
caagtagagaaaggactataagcaagtacacaaagatagctgttgtggtgttcaagctaatattttcagctatttttggaaatcctgtatctgcttttgt |
8261980 |
T |
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| Q |
141 |
tactcttgtggaagctcttgcttcaaat |
168 |
Q |
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| T |
8261979 |
tgctctattggaagctcttgcttaaaat |
8261952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 8322908 - 8322994
Alignment:
| Q |
85 |
gtggtgttcaagctactattttcagctatttttggaaaccctatatctgctgtttttactcttgtggaagctcttgcttcaaattaa |
171 |
Q |
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|||| |||||| ||| |||||||||||||||||||||| ||||||||| | || |||| || |||||| | |||||||||||||| |
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| T |
8322908 |
gtggcgttcaaactaatattttcagctatttttggaaatcctatatctttttttactactattctggaagttattgcttcaaattaa |
8322994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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