View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10810_2 (Length: 576)
Name: NF10810_2
Description: NF10810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10810_2 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 131 - 573
Target Start/End: Original strand, 1045396 - 1045813
Alignment:
| Q |
131 |
actctataaaattgttacattatttacaatcaataaaatattaattttaccatcaaaatctaactaaaaaacttatttcacaagaaaaatcatattttta |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1045396 |
actctataaaattgttacattatttacaatcaataaaatattaattttaccatcaaaatctaactaaaaaacttatttcacaagaaaaatcatattttta |
1045495 |
T |
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| Q |
231 |
gatcgatagtagtattcatcgtcttctcagtttcattttaggttctgcataagtgcatcatcgaagcttctacccttcgcgaaaacaattcaattataac |
330 |
Q |
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| T |
1045496 |
gatcgatagtagtattcatcgtcttctcagtttcattttcggttat----------accatcgaagcttctacccatggcgaaaacaattcaattataac |
1045585 |
T |
|
| Q |
331 |
gaaaccctctcactatacggtacgatcttttcttcactgtttgaatctattcgattaacaagtataataaataactcattgtaatcacgttttgtgctcc |
430 |
Q |
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| T |
1045586 |
gacaccctctcactataaggtacgatcttttcttcactgtttgaatctattcgattaacaagtataataaataactca-------------ttgtgctcc |
1045672 |
T |
|
| Q |
431 |
taattttttcaatttatcttgttatttgttatttttggcaaacattctgtgtgtgtgactgaaatttttgttaaaatttaaagaaaatggaaaagtagtt |
530 |
Q |
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| T |
1045673 |
taattttttcaatttatcttgttatctgttatttttggcaaacattc--tgtgtgtgactgaaatttttgttaaaatttaaagaaaatggaaaagtagtt |
1045770 |
T |
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| Q |
531 |
tgtttaaggagttgatatgacttgaattgtggctataacttat |
573 |
Q |
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| T |
1045771 |
tgtttaaggagttgatatgacttgaattgtggctataacttat |
1045813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 1039303 - 1039345
Alignment:
| Q |
338 |
tctcactatacggtacgatcttttcttcactgtttgaatctat |
380 |
Q |
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| T |
1039303 |
tctcacgatacggtacgttcttttcttcactgtttgaatctat |
1039345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 25055149 - 25055109
Alignment:
| Q |
79 |
ccaatgaggcacttaatagaaccttcaccctagaatccacc |
119 |
Q |
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| T |
25055149 |
ccaatgaggaacttaattgaaccctcaccctagaatccacc |
25055109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 18569039 - 18569081
Alignment:
| Q |
91 |
ttaatagaaccttcaccctagaatccacctatttaatttcact |
133 |
Q |
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| T |
18569039 |
ttaataggaccttcaccctagaatccacctatataattacact |
18569081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 24848438 - 24848475
Alignment:
| Q |
83 |
tgaggcacttaatagaaccttcaccctagaatccacct |
120 |
Q |
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|
| T |
24848438 |
tgagggacttaatagaaccctcaccctagaatccacct |
24848475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 24847819 - 24847783
Alignment:
| Q |
83 |
tgaggcacttaatagaaccttcaccctagaatccacc |
119 |
Q |
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| T |
24847819 |
tgagggacttaatagaaccctcaccctagaatccacc |
24847783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 4402299 - 4402335
Alignment:
| Q |
83 |
tgaggcacttaatagaaccttcaccctagaatccacc |
119 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||| |
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| T |
4402299 |
tgagggacttaatagaaccctcaccctagaatccacc |
4402335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 4706968 - 4707004
Alignment:
| Q |
83 |
tgaggcacttaatagaaccttcaccctagaatccacc |
119 |
Q |
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||||| ||||||||||||| ||||||||||||||||| |
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| T |
4706968 |
tgagggacttaatagaaccctcaccctagaatccacc |
4707004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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