View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10810_3 (Length: 544)
Name: NF10810_3
Description: NF10810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10810_3 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 28 - 316
Target Start/End: Original strand, 39245684 - 39245975
Alignment:
| Q |
28 |
aaggaaacagtgactgatctgctagatggggagcaccttttcaatgtaaaaattaaaaattagctagccacactttgacctttttccaccttttcaattt |
127 |
Q |
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| T |
39245684 |
aaggaaacagtgactgttctgctagatggggagcaccttttcaatgtgaaaattaaaaattagctagctacactttgacctttttccaccttttcaattt |
39245783 |
T |
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| Q |
128 |
ttcacgttaattatggcttttgctgctttaacta---tctgtttcatttgattaattatcaccaataaggctatttgaatgacttcatttttcatcgttc |
224 |
Q |
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| T |
39245784 |
ttcacgttaattatggcttttgctgctttaactactttctgtttcatttgattaattatcaccaataaggctatttgaatgacttcatttttcatcgttc |
39245883 |
T |
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| Q |
225 |
caataaaccgtttgaaattaacgattgcatgttatatatagaacacattaatgtagtcttagaagtatattctggagaattctttggtaccc |
316 |
Q |
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| T |
39245884 |
caataaaccgtttgaaattaacgattgcatgttatatatagaacacattaatatagtcttagaagtatattctggataattctttggtaccc |
39245975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 345 - 500
Target Start/End: Original strand, 39246004 - 39246159
Alignment:
| Q |
345 |
aacatgcatattcaaattaaacatcttgttcaaggaccacaaaaattcatgtgcaatgctctgggtcagacatatactttggatgggaccatgaaaattt |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39246004 |
aacatgcatattcaaattaaacatcttgttcaaggaccacaaaaattcatgtgcaatgctctggatcagacatatactttggatgggaccatgaaaattt |
39246103 |
T |
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| Q |
445 |
taatggtagacaaagttattttccatgacaaggtttgcttttcaaaaattcacagg |
500 |
Q |
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| T |
39246104 |
taatggtagacaaagttattttccatgacaggttttgcttttcaaaatttcacagg |
39246159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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