View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10810_4 (Length: 483)
Name: NF10810_4
Description: NF10810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10810_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 9 - 483
Target Start/End: Complemental strand, 41103375 - 41102901
Alignment:
| Q |
9 |
gagatgaacaacatcggagaatcgtgtttcgctgatatttgcagagaaagcgcactgatgctgtttgcattcccggaaaacgtggcaaaatgcaagaaaa |
108 |
Q |
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| T |
41103375 |
gagaagaacaacatcggagaatcgtgtttcgctgatatttgcagagaaagcgcattaatgctgtttgcattcccggaaaacgtggcaaaatgcaagaaaa |
41103276 |
T |
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| Q |
109 |
ctccggagaaaatgttcagaacgcttgatttatacgaagcgatttcagaaaattggaatcaaattgaatcaattttttcgtcggaatcaaactcaccgat |
208 |
Q |
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| T |
41103275 |
ctccggagaaaatgttcagaacgcttgatttatacgaagcgatttcagaaaattggaatcaaattgaatcaattttttcgtcggaatcaaactcaccgat |
41103176 |
T |
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| Q |
209 |
cagatcgcaagtcgttgcttcacaggttagactcggtgaaacggttagaacaatgttaaccgattttgaatcggcgattcagaaggaatcttcgaagatt |
308 |
Q |
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| T |
41103175 |
cagatcgcaagtcgttgcttcacaggttagactcggtgaaacggttagaacaatgttaaccgattttgaatcggcgattcagaaggaatcttcgaagatt |
41103076 |
T |
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| Q |
309 |
ccggtaccaggcggaggaatccatcctctcacacgctatgtcatgaactacatcgcacttctcgccgattacagcgaagcaatcggcgatatagtttccg |
408 |
Q |
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| T |
41103075 |
ccggtaccaggcggaggaatccatcctctcacacgctatgtcatgaactacatcgcacttctcgccgattacagcgaagcaatcggcgatatagtttccg |
41102976 |
T |
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| Q |
409 |
attggccacaaactccggtaccggaatcttactacaaaagtccaattcacgacgaggataatccaccgtcggaga |
483 |
Q |
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| T |
41102975 |
attggccacaaactccggtaccggaatcttactacaaaagtccaattcacgacgaggataatccaccgtcggaga |
41102901 |
T |
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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 23129108 - 23129044
Alignment:
| Q |
93 |
gcaaaatgcaagaaaactccggagaaaatgttcagaacgcttgatttatacgaagcgatttcaga |
157 |
Q |
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| T |
23129108 |
gcaaaatgcaagaaaactcctgagaaaatgttcagaactcttgatttatacgaagcaatttcaga |
23129044 |
T |
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