View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10810_5 (Length: 475)
Name: NF10810_5
Description: NF10810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10810_5 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 27 - 452
Target Start/End: Complemental strand, 45200841 - 45200418
Alignment:
| Q |
27 |
gacctcgtaagtttttctactttgtgaatgttttgattgacggtgaagcgtagcattagaatcacgatgagtcattgtgattttggtaaaagccatacat |
126 |
Q |
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| T |
45200841 |
gacctcgtaagtttttctactttgtgaatgttttgattgacggtgaagcgtagctttagaatcacgatgagtcattgtgattttggtaaaagccatactt |
45200742 |
T |
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| Q |
127 |
agcttcaacaaaatcatgatgtcaccgtgattttgacaaactcacagtttgttacattttattttttacaatctatgaataacagacattgacatgtcga |
226 |
Q |
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||||||||||||||||| ||||||| |||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45200741 |
agcttcaacaaaatcataatgtcactgtgattttgaaaaactcaccgtttgttacattttatttgttacaatctatgaataacagacattgacatgtcga |
45200642 |
T |
|
| Q |
227 |
caacaataatcaattgtcggtgtggtgttgatgtccgacactaagatgtgttggacaccatacatgcatttgatcagaagtgtcgatgctacaaatgtta |
326 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
45200641 |
caacaataatcatttgtcggtgtggtgttgatgtccgacactgagatgtgttggacaccatacatacattcgatcagaagtgtcgatgctacaaatgtta |
45200542 |
T |
|
| Q |
327 |
taagttatatattcattcatttttgttgttattaaaaagcaatgtggttgatttgcaggagagaatccctgttgatgaagtgtttcgagaattgaattgt |
426 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45200541 |
taagtt--atattcattcatttttgttgttattaaaaagcaatgtggttgatttgcaggagagaatccctgttgatgaagtgtttcgagaattgaattgt |
45200444 |
T |
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| Q |
427 |
actaaagaaggtctcactaatgatga |
452 |
Q |
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| T |
45200443 |
actaaagaaggtctcactaatgatga |
45200418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 7873108 - 7873062
Alignment:
| Q |
125 |
atagcttcaacaaaatcatgatgtcaccgtgattttgacaaactcac |
171 |
Q |
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| T |
7873108 |
atagcttcaacaaaatcatggtgtcaccgtaattttatcaaactcac |
7873062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 23585733 - 23585692
Alignment:
| Q |
129 |
cttcaacaaaatcatgatgtcaccgtgattttgacaaactca |
170 |
Q |
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| T |
23585733 |
cttcaacaaaatcatgttgtcactgtgattttgtcaaactca |
23585692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 27870946 - 27870987
Alignment:
| Q |
130 |
ttcaacaaaatcatgatgtcaccgtgattttgacaaactcac |
171 |
Q |
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| T |
27870946 |
ttcaacaaaatcatggtgtcaccgtgattttatcaaactcac |
27870987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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